PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014446-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26107.4 Da PI: 11.1475 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 9e-12 | 59 | 105 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ + +Lr++lP++ K++Ka++L ++v+ +++L WALNUT_00014446-RA 59 KKHSEAERRRRKRINDQYRTLRSVLPNL-----IKMDKATVLAETVRQVREL 105 68*************************9.....6************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.478 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 59 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-9 | 59 | 110 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-14 | 60 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-14 | 60 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-11 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.04E-5 | 144 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.8E-5 | 145 | 198 | No hit | No description |
CDD | cd04873 | 5.18E-5 | 146 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MALLRQLEHE MQQFRSNYVS GTYTIQNSFS RGGITTDTTN LRSLFKPKSK AETKQLNAKK 60 HSEAERRRRK RINDQYRTLR SVLPNLIKMD KATVLAETVR QVRELRKTVS DLEAVCHGSN 120 KDCVFPSGVD KLSLERCEDD KGVVKVTFSC EDRTGLMSAV ARQLRAVKGR LVRSKMVTVG 180 GRTKVVLWLQ GLEGGNEGMV MVRRALNEVI DKPILPGIMK MRWRTRRW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820968.1 | 1e-168 | PREDICTED: transcription factor bHLH131-like | ||||
TrEMBL | A0A2I4ENK3 | 1e-167 | A0A2I4ENK3_JUGRE; transcription factor bHLH131-like | ||||
STRING | XP_008235541.1 | 5e-80 | (Prunus mume) | ||||
STRING | EMJ07725 | 6e-80 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 1e-48 | bHLH family protein |