PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014430-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 244aa MW: 26727.8 Da PI: 7.4385 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.8e-32 | 53 | 108 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + rY+eClkNhA+ +Ggha+DGCgEfmp+ g egt +alkCaAC+CHRnFHR+e++ WALNUT_00014430-RA 53 RPRYRECLKNHAVGIGGHALDGCGEFMPA-GVEGTLDALKCAACNCHRNFHRKETDG 108 569*************************9.999*********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 52 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-30 | 55 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-29 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.243 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.29E-19 | 172 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-31 | 172 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-25 | 181 | 237 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEFEDQEEHE EEMELAGASY DSLGNSGRVK MQSSGGGGVG GPELAVAQQQ KGRPRYRECL 60 KNHAVGIGGH ALDGCGEFMP AGVEGTLDAL KCAACNCHRN FHRKETDGHP GAAIGSADPY 120 LQLPHHPQFS PFYRTPSGYL HVAPQQHRPL ALPSTSGGHS REEQEEDVSN PSGGLGGSLS 180 KKRFRTKFTQ EQKDKMLGLA ESLGWRIQKH DEAVVQQFCN ETGVKRHVLK VWMHNNKHTL 240 GKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-27 | 180 | 239 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820987.1 | 1e-180 | PREDICTED: zinc-finger homeodomain protein 1-like isoform X1 | ||||
Swissprot | Q6YXH5 | 5e-83 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2I4ENL2 | 1e-178 | A0A2I4ENL2_JUGRE; zinc-finger homeodomain protein 1-like isoform X1 | ||||
STRING | EMJ06891 | 1e-114 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-69 | homeobox protein 22 |
Publications ? help Back to Top | |||
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