PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014062-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 266aa MW: 29468 Da PI: 5.6816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014062-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.2	8.5e-46	6	135	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrF Pt+eelv++yL++ ++gk +++++i+ +di+++ePw+Lpk ++a++++w+fF++r++++a+g r++r+t+sgyWkatg+ WALNUT_00014062-RA 6 PGFRFYPTEEELVSFYLRNMLDGKGPDVHRIIPVIDICDMEPWHLPKlageLCQADTEQWFFFTPRQEREARGGRPSRTTDSGYWKATGSP 96 9*************************999***********656765556788***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ WALNUT_00014062-RA 97 GYVYSSENRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.702	4	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.15E-48	5	160	IPR003441	NAC domain
Pfam	PF02365	6.8E-24	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEVPHPGFRF YPTEEELVSF YLRNMLDGKG PDVHRIIPVI DICDMEPWHL PKLAGELCQA 60 DTEQWFFFTP RQEREARGGR PSRTTDSGYW KATGSPGYVY SSENRVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEEEI NPHSRVIPKL RHEFTLCRVY VISGSFRAFD RRPEVSTIKT 180 QHVIDGAGAG AGAGAGAGAG AGAGAGAAST SQNATMEERT SSSETSYSGG DLPDLPELAG 240 SINWDINDGL ESLLEWDQID WLTQAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_B	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_C	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_D	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_A	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_B	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_C	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_D	4e-33	6	160	22	166	NAC domain-containing protein 19
4dul_A	4e-33	6	160	19	163	NAC domain-containing protein 19
4dul_B	4e-33	6	160	19	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831275.1	0.0	PREDICTED: NAC domain-containing protein 90-like isoform X3
Swissprot	Q9FMR3	4e-92	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I4FHZ4	0.0	A0A2I4FHZ4_JUGRE; NAC domain-containing protein 90-like isoform X3
STRING	XP_006424204.1	1e-111	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-89	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]