PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014048-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 16608 Da PI: 9.9647 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.9 | 4.5e-28 | 32 | 109 | 50 | 127 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +v ++++ew+fFs r +ky++g++++rat+ gyWkatg++++ + +++++g+k+tLvf++grapkge+t+W+mhey WALNUT_00014048-RA 32 SVIQSDNEWFFFSARGRKYPNGSQSRRATELGYWKATGRKERNEKFGSNVIGTKRTLVFHTGRAPKGERTEWIMHEYY 109 4445789********************************9988888*******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.536 | 1 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-14 | 31 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.02E-27 | 34 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MCYNWVQILD EPLFLPGLSY LFVLENLQTA KSVIQSDNEW FFFSARGRKY PNGSQSRRAT 60 ELGYWKATGR KERNEKFGSN VIGTKRTLVF HTGRAPKGER TEWIMHEYYC MTGIAQVLGD 120 AWLRRKLVAC GGTTIAYGNK ENLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-20 | 37 | 108 | 70 | 140 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-20 | 37 | 108 | 70 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-20 | 37 | 108 | 70 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-20 | 37 | 108 | 70 | 140 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swm_B | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swm_C | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swm_D | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swp_A | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swp_B | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swp_C | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
3swp_D | 3e-20 | 37 | 108 | 73 | 143 | NAC domain-containing protein 19 |
4dul_A | 3e-20 | 37 | 108 | 70 | 140 | NAC domain-containing protein 19 |
4dul_B | 3e-20 | 37 | 108 | 70 | 140 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831278.1 | 6e-49 | PREDICTED: NAC domain-containing protein 60-like | ||||
Swissprot | Q94F58 | 4e-40 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | A0A2I4FI08 | 1e-47 | A0A2I4FI08_JUGRE; NAC domain-containing protein 60-like | ||||
STRING | POPTR_0009s16290.1 | 1e-45 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32362 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 2e-42 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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