PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013880-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 331aa    MW: 37068.4 Da    PI: 6.7867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013880-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.51.4e-121133038374
                GRAS  38 mqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                         m+R+a++fteAL+arla + +++ k+ ++ +++ +     s+e l+++++ ++++P++kf+h+t NqaI ea+e eervH+iD+di qG Q
  WALNUT_00013880-RA   1 MHRVASCFTEALSARLAATLTSTTKTSTSIPKPFSPfppdSQEILKIYQIVYQACPYIKFAHFTSNQAIFEAFEAEERVHVIDLDILQGYQ 91 
                         89***************97666666554443333224455*************************************************** PP

                GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                         Wpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef++ v ++ledl+ +++  + gEalaVn+v +lh+++ 
  WALNUT_00013880-RA  92 WPAFMQALAARPGGAPFLRITGVGP----SMESVRETGRCLTELAHSLHIPFEFHA-VGEQLEDLKAHMFGRRVGEALAVNSVNRLHHVP- 176
                         *************************....***************************.7*******************************9. PP

                GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                            +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+va eg+er+
  WALNUT_00013880-RA 177 -GNCLG----NLLAIIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVAYEGSERI 262
                         .44444....5******************************************************************************** PP

                GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         erhe+lekWr+ +e  GF+ vpls +a++q + ll  ++ dgyr+ e+ g+l+lgW+dr+L+++SaWr
  WALNUT_00013880-RA 263 ERHERLEKWRKLMEGKGFRGVPLSANAVTQSRILLGLYSCDGYRLTEDMGCLLLGWQDRALIAASAWR 330
                         *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.2631310IPR005202Transcription factor GRAS
PfamPF035144.7E-1191330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MHRVASCFTE ALSARLAATL TSTTKTSTSI PKPFSPFPPD SQEILKIYQI VYQACPYIKF  60
AHFTSNQAIF EAFEAEERVH VIDLDILQGY QWPAFMQALA ARPGGAPFLR ITGVGPSMES  120
VRETGRCLTE LAHSLHIPFE FHAVGEQLED LKAHMFGRRV GEALAVNSVN RLHHVPGNCL  180
GNLLAIIRDQ APNIVTLVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDAT FPPDSAQRAK  240
VEQYIFAPEI RNIVAYEGSE RIERHERLEK WRKLMEGKGF RGVPLSANAV TQSRILLGLY  300
SCDGYRLTED MGCLLLGWQD RALIAASAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-92232956377Protein SCARECROW
5b3h_D9e-92232956377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834825.10.0PREDICTED: scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2I4FT510.0A0A2I4FT51_JUGRE; scarecrow-like protein 21
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-88RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]