PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013875-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 393aa MW: 44821.8 Da PI: 9.8551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013875-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.4	1.9e-25	24	143	1	114
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkat 86 lp G+rFhPtdeelv +yLk+kv + +l++ +vi+e+d+++++Pw Lp + +++ yfFs+r+k+ +t +n t+sgyWk WALNUT_00013875-RA 24 LPIGYRFHPTDEELVFHYLKRKVFAIPLPV-SVIPEFDVFQTDPWGLPGDL---KEKRYFFSTRSKRISTALDNNYCkraagTTSGYWKPV 110 699*************************.99***********554...4578****999755444322335588*** PP NAM 87 gkdkevlskkgel..vglkkt...Lvfykgrap 114 gk+k++l++++++ + + + Lvf ++++p WALNUT_00013875-RA 111 GKSKQILASESNVsmMVMEDWvvyLVFQRKKRP 143 *****98554433444444111444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-28	11	135	IPR003441	NAC domain
PROSITE profile	PS51005	27.212	24	175	IPR003441	NAC domain
Pfam	PF02365	3.5E-13	25	126	IPR003441	NAC domain
Pfam	PF13456	6.4E-13	288	385	No hit	No description
CDD	cd06222	7.19E-12	302	383	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQEKPKQYCA MINNINNGSG ITVLPIGYRF HPTDEELVFH YLKRKVFAIP LPVSVIPEFD 60 VFQTDPWGLP GDLKEKRYFF STRSKRISTA LDNNYCKRAA GTTSGYWKPV GKSKQILASE 120 SNVSMMVMED WVVYLVFQRK KRPEKQGVMI SQPSNSKKIR RLEVRPTTMN YMGEVSSDLG 180 PDPQPSSSCK SEITEVSSII GLDQEETRKV RNKEPKGRYL GTPRLGKRNP RTWRALQSLD 240 GFRSEAIRSK EANSSGGSLV STIKQWMMSK IMLWDWGLSS ETVKGIEVVA AYSEPQRMNA 300 IAVLVEAIAL RRTIEVCKEM GFNKVVFEGD ALIIINAVTD NVECWTWYGQ VVEDVKRSLK 360 EMLHWEIQFV QRKGNIIAHK LTKFALNLEN FTC

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQEKPKQYCA MINNINNGSG ITVLPIGYRF HPTDEELVFH YLKRKVFAIP LPVSVIPEFD  60
VFQTDPWGLP GDLKEKRYFF STRSKRISTA LDNNYCKRAA GTTSGYWKPV GKSKQILASE  120
SNVSMMVMED WVVYLVFQRK KRPEKQGVMI SQPSNSKKIR RLEVRPTTMN YMGEVSSDLG  180
PDPQPSSSCK SEITEVSSII GLDQEETRKV RNKEPKGRYL GTPRLGKRNP RTWRALQSLD  240
GFRSEAIRSK EANSSGGSLV STIKQWMMSK IMLWDWGLSS ETVKGIEVVA AYSEPQRMNA  300
IAVLVEAIAL RRTIEVCKEM GFNKVVFEGD ALIIINAVTD NVECWTWYGQ VVEDVKRSLK  360
EMLHWEIQFV QRKGNIIAHK LTKFALNLEN FTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-16	24	116	15	105	Stress-induced transcription factor NAC1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834820.1	1e-134	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A2I4FT48	1e-133	A0A2I4FT48_JUGRE; NAC domain-containing protein 83-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-32	NAC domain containing protein 83