PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013666-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 278aa    MW: 31268.6 Da    PI: 8.4498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013666-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT eE+e l  +v+++G+g Wk I r          Rt  ++k++w++
  WALNUT_00013666-RA  5 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfntvlFSRTNIDLKDKWRN 55
                        79*******************************9**989**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7162IPR017930Myb domain
SuperFamilySSF466891.08E-16258IPR009057Homeodomain-like
SMARTSM007172.4E-8459IPR001005SANT/Myb domain
PfamPF002493.6E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-14556IPR009057Homeodomain-like
CDDcd116601.46E-21656No hitNo description
SuperFamilySSF467852.07E-13115193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.3E-13115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.05117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.5E-11119193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.3E-8120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKD IQRDPEFNTV LFSRTNIDLK DKWRNMSVSA  60
GQGPREKSRT PKTKPNPDAP ATPLAILQTS TAAPVANIAT TDPNMDDSSK SLMDGKNASR  120
YNAMIFEALS TLKEPDGLDT GKIVSFIEKR HEVPQNFRRL LSTRLRRLVA QDKLEKVQNC  180
YKMKNDASSE TPTQKQDIQC KQLQSIDDVL TEDTIKEIAE AAAYKIAEAE NKLFVAAEAI  240
KEAERISKMA EDTDSLLQLA KEIFEKCIWK SRFLQLLP
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846199.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L12e-65TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2I4GQM60.0A0A2I4GQM6_JUGRE; telomere repeat-binding factor 4-like
STRINGXP_010242277.11e-118(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-59MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]