PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013428-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 384aa    MW: 43487.8 Da    PI: 9.3691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013428-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.95.9e-411162713133
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasn 84 
                          k drhski T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+eWLl qak +ik+l++          ++s+as+++++ ++     
  WALNUT_00013428-RA 116 YKGDRHSKINTARGPRDRRMRLSLEVARKFFGLQDMLGFDKASKTVEWLLLQAKVEIKKLAREvkrscsvgvKTSTASSTSESGEVL---- 202
                         578************************************************************877777777333332222222222.... PP

                 TCP  85 sssg......................kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                            +                      + ++sa+ k++ +q ++++++ la+esr +arararert+ek r++
  WALNUT_00013428-RA 203 ---SgidevaiydgnqqgravskektSTCTSAKeKKNIRQWRKSAFHPLARESRDQARARARERTKEKLRTR 271
                         ...0222233334444445677777777777776777777788889**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-43117269IPR005333Transcription factor, TCP
PROSITE profilePS5136932.948117175IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.367250267IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDGAREKMIS DKWMKDCSLY KWKQNSTKKM LPNLNIFSNS KQEDPSPLCF LDHFSSSPSI  60
DGNAFLENHH DLLFHQQSMV KSDKNTTGTV TNMVDSRKTH INRQTVAEQI PRKRTYKGDR  120
HSKINTARGP RDRRMRLSLE VARKFFGLQD MLGFDKASKT VEWLLLQAKV EIKKLAREVK  180
RSCSVGVKTS TASSTSESGE VLSGIDEVAI YDGNQQGRAV SKEKTSTCTS AKEKKNIRQW  240
RKSAFHPLAR ESRDQARARA RERTKEKLRT RRLDESKFCE VDTANSSDLS RLSIWSLLET  300
GELESAGTQS HNMNPSMDQA LPDHQIEEES SHAPDHDLGA AEDMVNDDSL VIIGRWSPSL  360
IFNTVNINTG ISQEASSINN MFNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825368.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A2I4F1350.0A0A2I4F135_JUGRE; transcription factor DICHOTOMA-like
STRINGEOY209268e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-25TCP domain protein 12