PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013406-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19746.4 Da PI: 9.9883 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.3 | 1.3e-44 | 24 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+rF Ptdeel+v+yL+kk+ +++l++ + i ev++y ++P L +k+k +e+++y F++rd+ky++g+r+nra+ +gyWkatg d + WALNUT_00013406-RA 24 PPGYRFLPTDEELIVFYLEKKAWNQPLPI-NNIVEVNLYAHNPDFLAAKYKDyQEDQLYIFTPRDRKYRNGRRPNRAAGDGYWKATGADMK 113 8****************************.78**************965555366699********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s kg++vg +k Lvfy g+apkg+kt+W+mhe+r+ WALNUT_00013406-RA 114 IKS-KGTVVGYRKALVFYIGKAPKGKKTNWIMHEFRV 149 ***.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-51 | 16 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.145 | 23 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-23 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEVESGNFNS NNKTKEQAGF FNKPPGYRFL PTDEELIVFY LEKKAWNQPL PINNIVEVNL 60 YAHNPDFLAA KYKDYQEDQL YIFTPRDRKY RNGRRPNRAA GDGYWKATGA DMKIKSKGTV 120 VGYRKALVFY IGKAPKGKKT NWIMHEFRVE DSPCSGRGSN GMRVCSFSSF Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-45 | 21 | 149 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-45 | 21 | 149 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-45 | 21 | 149 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-45 | 21 | 149 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 21 | 162 | 18 | 157 | NAC domain-containing protein 19 |
4dul_A | 5e-45 | 21 | 149 | 15 | 142 | NAC domain-containing protein 19 |
4dul_B | 5e-45 | 21 | 149 | 15 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018825363.1 | 1e-113 | PREDICTED: NAC domain-containing protein 71-like | ||||
Swissprot | Q52QH4 | 1e-46 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
Swissprot | Q8H4S4 | 2e-46 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2I4F134 | 1e-112 | A0A2I4F134_JUGRE; NAC domain-containing protein 71-like | ||||
STRING | XP_008227355.1 | 7e-67 | (Prunus mume) | ||||
STRING | EMJ15685 | 3e-68 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-47 | NAC-like, activated by AP3/PI |