PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013201-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 414aa    MW: 46104.1 Da    PI: 7.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013201-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13348393655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + a++Le+AveYIk+Lq
  WALNUT_00013201-RA 348 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLELAVEYIKDLQ 393
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-17344406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-13346397No hitNo description
Gene3DG3DSA:4.10.280.109.3E-16347403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-14348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MESDLQRQHH NFDNRQNQHH QNQMNSGLTR YRSAPSSYFS SIIDREFCEQ FFNRPSSPET  60
ERIFARFMTS GGTDDDALEV EAKEVNRQQL PQFMAPVNTE AAGVLQQQNN YVSASHDFYQ  120
SPSRQPLPNQ GLNSSVDAGS YPMGMDRILP QMKTGVGNNS SLVRHSSLPV GSFSHINVEN  180
SFAAMRGTGN FGTARSTNED ASFSSASRLK NYSSGPPSSA GKMSPIAEID DKNMVAHNSD  240
GGNFGEGRGD DYVTGFPIVS WDDSAMMSDN ITGLKRVRDD DAKTFSNLKV SETQNMESGN  300
RPPTGLAHHL SLPKTAAEMA ALEKFLQFQD SVPCKIRAKR GFATHPRSIA ERVRRTRISE  360
RMRKLQDLVP NMDKQTNTAD MLELAVEYIK DLQKQVQTLS DNRARCTCSN KQQP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3930291e-39FQ393029.1 Vitis vinifera clone SS0AFA2YP14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830949.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_018830951.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A2I4FH320.0A0A2I4FH32_JUGRE; transcription factor bHLH130-like
STRINGXP_008219331.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-77bHLH family protein