PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013191-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 254aa MW: 27601.9 Da PI: 4.9377 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 36.2 | 1.5e-11 | 27 | 63 | 3 | 39 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecv 39 e+d+flPian+s i+kk l an+kiskd etvqec+ WALNUT_00013191-RA 27 EHDQFLPIANMSWIVKKELLANTKISKDVAETVQECI 63 78**********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.5E-8 | 27 | 63 | IPR009072 | Histone-fold |
PROSITE profile | PS51036 | 9.809 | 80 | 114 | IPR002653 | Zinc finger, A20-type |
SMART | SM00259 | 2.6E-9 | 83 | 107 | IPR002653 | Zinc finger, A20-type |
Pfam | PF01754 | 8.7E-13 | 84 | 107 | IPR002653 | Zinc finger, A20-type |
SuperFamily | SSF57716 | 1.33E-12 | 85 | 121 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 6.9E-30 | 179 | 250 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.84E-29 | 180 | 249 | No hit | No description |
PROSITE profile | PS51039 | 12.212 | 192 | 235 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.2E-9 | 195 | 231 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 4.0E-16 | 195 | 232 | IPR000058 | Zinc finger, AN1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEDLDNEFEG DGERTGNASA NELSPWEHDQ FLPIANMSWI VKKELLANTK ISKDVAETVQ 60 ECIWRVEKMD HDETGCQAPP EGPILCVNNC GFFGSAATMN MCSKCHKDML LKQEQTKLAA 120 SSFGSIVNGS SSSNGNELVI ATVDVEVNSV EPKAISVQPS FSFGAGESSE AKPSSFSFGS 180 EENTEAKPKE GPKRCSSCNK RVGLTGFNCR CGDLFCAVHR YSDKHGCPFD YRTAARDAIA 240 KANPVIKAEK LDKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wfl_A | 1e-17 | 181 | 235 | 14 | 68 | Zinc finger protein 216 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224095 | 2e-59 | CU224095.1 Populus EST from leave. | |||
GenBank | CU224782 | 2e-59 | CU224782.1 Populus EST from leave. | |||
GenBank | CU224891 | 2e-59 | CU224891.1 Populus EST from leave. | |||
GenBank | CU226206 | 2e-59 | CU226206.1 Populus EST from leave. | |||
GenBank | EF144544 | 2e-59 | EF144544.1 Populus trichocarpa clone WS01110_F13 unknown mRNA. | |||
GenBank | EF144754 | 2e-59 | EF144754.1 Populus trichocarpa clone WS01117_N21 unknown mRNA. | |||
GenBank | EF145692 | 2e-59 | EF145692.1 Populus trichocarpa clone WS0112_K23 unknown mRNA. | |||
GenBank | EF147029 | 2e-59 | EF147029.1 Populus trichocarpa clone WS01226_G20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830900.1 | 1e-136 | PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
Refseq | XP_018830901.1 | 1e-136 | PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
Refseq | XP_018830902.1 | 1e-136 | PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
Swissprot | A2YEZ6 | 4e-79 | SAP8_ORYSI; Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
Swissprot | A3BDI8 | 4e-79 | SAP8_ORYSJ; Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
TrEMBL | A0A2I4FGZ0 | 1e-134 | A0A2I4FGZ0_JUGRE; zinc finger A20 and AN1 domain-containing stress-associated protein 8 | ||||
STRING | POPTR_0003s20450.1 | 7e-99 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 4e-12 | nuclear factor Y, subunit B2 |
Publications ? help Back to Top | |||
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