PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013070-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 648aa    MW: 74169.4 Da    PI: 8.3396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013070-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08460501240
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         ++W++eE ell+++ +++++g   +W+ +++++g+gR+ +++
  WALNUT_00013070-RA 460 KPWSKEEIELLKKGMQKYPKGisrRWEVVSEYIGTGRSVEEI 501
                         69***********************************99876 PP
2Myb_DNA-binding28.43.9e-09591635345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  WALNUT_00013070-RA 591 VWSAVQERALVQALKTFPKEanqRWERVAAAVP-GKTVNQCKKKFT 635
                         6********************************.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.2E-2192195IPR001623DnaJ domain
SuperFamilySSF465655.89E-2093174IPR001623DnaJ domain
SMARTSM002714.5E-1495170IPR001623DnaJ domain
PROSITE profilePS5007618.51696178IPR001623DnaJ domain
PfamPF002265.2E-1896175IPR001623DnaJ domain
CDDcd062576.73E-1396167IPR001623DnaJ domain
PRINTSPR006255.6E-8101119IPR001623DnaJ domain
PRINTSPR006255.6E-8119134IPR001623DnaJ domain
PRINTSPR006255.6E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.604.1E-5455501IPR009057Homeodomain-like
SuperFamilySSF466894.06E-7456502IPR009057Homeodomain-like
PROSITE profilePS512936.997457512IPR017884SANT domain
SMARTSM007172.8E-5458511IPR001005SANT/Myb domain
PfamPF002494.8E-7460501IPR001005SANT/Myb domain
CDDcd001675.88E-5461501No hitNo description
PROSITE profilePS512939.991587642IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.9E-6588638IPR009057Homeodomain-like
SMARTSM007172.1E-9588640IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-9590646IPR009057Homeodomain-like
PfamPF002492.0E-7591635IPR001005SANT/Myb domain
CDDcd001671.41E-6592638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVCTKFRLI SYAEEIVDGQ PIYVYSNCLP VKALRYEPAG HAFHAAALRL LGCEEKEADD  60
DDQKVADDKG QTYVPSSDSY SSKGKKKSGA GAKQQDHYAL LGLSHLRYLA TEEQIRKSYR  120
ETALKHHPDK QAALLLAEET EAAKQAKKDE IENHFKSIQE AYEVLMDPVR RRIYDSTDEF  180
DDDIPTDCAP QDFFKVFGPA FLRNGRWSVN QPVPFLGDEN TLLKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEECTR IRVLVDNAYK RDPRILRRKE  300
EERAEKQRKK EAKFLAKKLQ EEEAARIAEE ERRQKEEEER RAAEVASQQK KEKEKEKKLL  360
RKERARLRTL SRPVVSPHLL DLSEDDVESL CMSLDIKQLR TLCDMMEGKE GIELAKVLRD  420
ADGYKNDSEG KKEHGQTQQQ NGTVESNGNV SLKSFEKKEK PWSKEEIELL KKGMQKYPKG  480
ISRRWEVVSE YIGTGRSVEE ILKATKTVLL QKPDAAKAFD SFIEKRKPAP SIASPLTTRE  540
EIEGVSTSQG SENSALKNNS PEGSLTRSTN NQNASESTAA NGVSSSSEQD VWSAVQERAL  600
VQALKTFPKE ANQRWERVAA AVPGKTVNQC KKKFTLLKES FRNKKNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1819229520123Zuotin
5dje_B2e-1819229520123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835537.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2I4FV640.0A0A2I4FV64_JUGRE; dnaJ homolog subfamily C member 2-like
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain