PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013001-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 646aa MW: 72828.2 Da PI: 4.8761 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 444 | 484 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 E rRR+++N++f+ Lr+++P+ + K +K++iL A+eY+k+L+ WALNUT_00013001-RA 444 E-RRREKLNERFFILRSMVPSiN------KEDKVSILDDAIEYLKELE 484 4.689****************77......9***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.3E-49 | 17 | 195 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 13.922 | 434 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-12 | 438 | 488 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-15 | 438 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 439 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-12 | 441 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-9 | 444 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MKSYMLAPME ERVPKNLTKQ LALAVRSIQW SYAIFWSLSA RQPGVLEWRD GYYNGDIKTR 60 KTIQAIELNA DQLGLQRSEQ LRELYESLSA GEANPQSRRP SVALSPEDLS DTEWYYLVCM 120 SFVFNIGQGL PGRTFANDQP IWMCNAHFAD SKAFSRSLLA RTLVCFPFLG GVIELGVTER 180 VLEDPSLIQH IKTSFLEIPY TAIISKKYTG AVHTRNGNSP ACAVFDQDIP ENKLISYVGC 240 EEFGIVSPND SSNGFEPNQP EEGSFMVEGI NGGASQVQSW QFMDDEFSNC VLHSMNSSDC 300 ISQTFVEPEK AVFTPKGELV KEDFLQEFQE YNHTKMNSLD LQSDDLHYQS VLSSLLESSH 360 RMILGPSFQK YHHESSFVSW NIGGLANFQN SGGRTPQNLL KKVLLAVPRM HVGGSPDSPE 420 DNGNKDGVWR PGADDMGVNH AVAERRREKL NERFFILRSM VPSINKEDKV SILDDAIEYL 480 KELERRVEEL TDVEARTKRK YQDTVERTSD NYGNDIINNT KKPLINKRKV CDIDETEPEI 540 NYNVSKESST DNVTVSMINK EVLIEMRCPW KEGVLLEIMD VLSNLQLDCH SVQSSTIEGI 600 LSLSFKSKFK GSVVASAGII KQALERFTRK PMAAVQDIEN TIDDIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-14 | 30 | 195 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-14 | 30 | 195 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-14 | 30 | 195 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-14 | 30 | 195 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852488.1 | 0.0 | PREDICTED: transcription factor EGL1-like isoform X1 | ||||
Refseq | XP_018852489.1 | 0.0 | PREDICTED: transcription factor EGL1-like isoform X1 | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A2I4H8L9 | 0.0 | A0A2I4H8L9_JUGRE; transcription factor EGL1-like isoform X1 | ||||
STRING | XP_008238828.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |