PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012077-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 313aa MW: 34833.5 Da PI: 7.6732

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012077-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.2	5.2e-69	90	246	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsa 85 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerq+qlaa++++ ++++ + +++kr+r++ + ++ WALNUT_00012077-RA 90 GGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQLAALQQQLQQQQdqhqeqqhfRGENPKRQRDN-QLGAAP 179 789*************************************************998887766655666655555555555554.555667 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l++t++++++s le ++P+ev+s+avfrcvrv++++d +e++aYqtav+igGhvfkGiLydqG e+ WALNUT_00012077-RA 180 LACTRIPNTTSG--LERGQFPAEVNSPAVFRCVRVGAMEDPDEQYAYQTAVNIGGHVFKGILYDQGRED 246 889999988765..88899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-66	91	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	93	135	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-26	196	243	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAGFFYLGGR EGPQNKQEEE EKQENSQFLY RNEEIYNKGF EIWPQYYQQQ QNMSNYYSFG 60 VGPSRRNLNS VSDESSRSGL TLIRQGGVGG GMNCQDCGNQ AKKDCSHLRC RTCCKSRGFQ 120 CQTHVKSTWV PAAKRRERQE QLAALQQQLQ QQQDQHQEQQ HFRGENPKRQ RDNQLGAAPL 180 ACTRIPNTTS GLERGQFPAE VNSPAVFRCV RVGAMEDPDE QYAYQTAVNI GGHVFKGILY 240 DQGREDRYTT VGESSSGGDG GGVQPLNFIT AATTTTTTAT TSTPSATLLD PSLFPAPLNA 300 FMAGTQFFPP PRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821034.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	Q9LQZ5	3e-93	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2I4ENQ9	0.0	A0A2I4ENQ9_JUGRE; protein SHI RELATED SEQUENCE 1-like isoform X1
STRING	EOY14902	1e-138	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-74	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]