PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00011995-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20983.6 Da PI: 8.6043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.9e-18 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr+p++ ++r++lg+f +e+Aaka++ a+ +l+g WALNUT_00011995-RA 42 PVFRGVRKRR-WGKWVSEIREPRK---KTRIWLGSFPAPEMAAKAYDVAAYCLKG 92 579****887.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-12 | 42 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-31 | 43 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-36 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 43 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-12 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-29 | 44 | 102 | No hit | No description |
PRINTS | PR00367 | 3.9E-12 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MEKQYPCTQH ALSFTDVAAT ATSTTKADNR KPDTQRGGTR HPVFRGVRKR RWGKWVSEIR 60 EPRKKTRIWL GSFPAPEMAA KAYDVAAYCL KGRKAQLNFP DQVEHLPRLS TCTARDIQEA 120 ASKAAQTMAS WNKGRDSGSD GEDFWGEIEL PELMTSPGCH WNSCGWSFTN DGTWPDGELA 180 QPFMACL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 38 | 102 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818347.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF023 | ||||
Swissprot | Q1ECI2 | 6e-60 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A2I4EG23 | 1e-138 | A0A2I4EG23_JUGRE; ethylene-responsive transcription factor ERF023 | ||||
STRING | Gorai.007G109400.1 | 6e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6375 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-62 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|