PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011799-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 242aa    MW: 26586.4 Da    PI: 6.9528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011799-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09157204455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00011799-RA 157 SHSLAERARREKIGERMTILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 204
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.76E-7151208No hitNo description
SuperFamilySSF474595.76E-17151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16153219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-9159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDPSALIDEG SFSNANAASQ NLMEIWQFPA TGAGEFGGGL GLRRMQFGDV LGENRDASAN  60
DPMSLDRVPN HGGARKRRDF ENDSAKGVST SNDNVANDCG GKRLKRRSGS GDENPDSKAE  120
AEPSSGKRVE QNTRPQSEPP KQDYIHVRAR RGQATDSHSL AERARREKIG ERMTILQDLV  180
PGCNKVIGKA LVLDEIINYV QSLQHQVEFL SMKLEVVNSR RNPSIEVFPS QNATPGYTDR  240
YS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819056.11e-180PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ0JXE72e-66BPE_ARATH; Transcription factor BPE
TrEMBLA0A2I4EI261e-179A0A2I4EI26_JUGRE; transcription factor bHLH79-like isoform X2
STRINGXP_010098235.17e-98(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-67BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]