PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00011416-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 310aa MW: 34843.1 Da PI: 4.9563 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed +++ +v ++G+g+W++++++ g++R++k+c++rw +yl WALNUT_00011416-RA 14 RGLWTAQEDAKILAYVSKHGTGNWTAVPKKAGLKRCGKSCRLRWTNYL 61 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.976 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.34E-21 | 16 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.84E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 65 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 75 | 66 | 176 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MVRPPCCDKL NLKRGLWTAQ EDAKILAYVS KHGTGNWTAV PKKAGLKRCG KSCRLRWTNY 60 LRPDLKHDSF TPQEEEMIVR LHAAIGSSRI GSLNKDFKNV TMLKSEPYPF PPQGFPNISS 120 QLVPSTTSPQ TTPIQLDTFF NSNQANNNHS FDLLAELQTI KLVTEVSNCS HNNTHPPPIF 180 LEDSLSSSSS SSPTCSTAAQ EKSPLDLSWH DFLLDDEFLP ADPQEQEIMA SHSSKEFASQ 240 NQNVIVQKNE TNKEAAIEEC IKAKGTDCEI LSNDFQPSSS SEISFVEAML DQEYRMFLDF 300 PNLLEEPFYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-13 | 11 | 87 | 4 | 79 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819595.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A2I4EJM1 | 0.0 | A0A2I4EJM1_JUGRE; transcription factor MYB35-like | ||||
STRING | POPTR_0015s07900.1 | 1e-98 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-47 | MYB family protein |