PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00011404-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 193aa MW: 20864.6 Da PI: 7.0295 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.1 | 4.7e-36 | 29 | 168 | 4 | 105 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 + r+ ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a+ +++++ s+ + WALNUT_00011404-RA 29 APPRTRDRHTKVNGRGRRIRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPATISTSSATIPSTV----Hsvpcri 115 5689**********************************************************666663331111111111....0111222 PP TCP 89 ....................................kaaksaakskksqksaa 105 +aa+++a ++ ++ + WALNUT_00011404-RA 116 qplsvvsdgqgmftmappppqpscrldlcqplgmeySAATASAAGNGYRHMPF 168 23333333333444455555555555555555555544444444444444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-31 | 33 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.203 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MGSDMVVQFP DQHPNSLATT PTTTKTQVAP PRTRDRHTKV NGRGRRIRMP ALCAARIFQL 60 TRELGHRSDG ETIEWLLRQA EPSIIAATGS GTVPATISTS SATIPSTVHS VPCRIQPLSV 120 VSDGQGMFTM APPPPQPSCR LDLCQPLGME YSAATASAAG NGYRHMPFTA LLLQSTATEE 180 AEESQQEELL REQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820554.1 | 1e-140 | PREDICTED: transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 6e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A2I4EMD4 | 1e-139 | A0A2I4EMD4_JUGRE; transcription factor TCP11-like | ||||
STRING | XP_004156285.1 | 9e-69 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-41 | TCP family protein |