PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011340-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 509aa    MW: 55669.8 Da    PI: 5.4191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011340-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.25.8e-1031175011374
                GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfs 85 
                         lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +++    k l    p+++++++++++laa++l++
  WALNUT_00011340-RA 117 LVHLLIAAAEALTGVNKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQCLLEGTGGVHPKNLignGPQRDEQHHQADVLAAFQLLQ 207
                         68***********96665559***********9987769******************95544444443423444444559*********** PP

                GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg....skeeleetgerLakfAe 170
                         ++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg    s  +++etg+rL  fA+
  WALNUT_00011340-RA 208 DMSPYVKFGHFTANQAILEAVSHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPapHLRITAISRGGSGsgrrSIGTIQETGRRLIAFAA 298
                         ***************************************************776555*********888888988999************* PP

                GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
                         ++g pf+f+    ++ e++++++L++ +gEal+Vn++l+l ++ ++s ++     ++L+  k+l P++v++ve+e+   +++ F+ rfl++
  WALNUT_00011340-RA 299 SIGQPFSFHQCRLDSDETFRPSALKLVRGEALVVNCMLHLPHFNHRSPDSVA---SFLSGAKTLTPRIVTMVEEEVGPiGEGGFVGRFLDT 386
                         **********9999*****************************977777666...9*******************9988************ PP

                GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh.etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                         l++ysal+dslea++p +s++r+ vEr++lg++i+  +a   ++r  +  ++ ++  e+l ++G+++vp+s  + +qaklll  ++ dgyr
  WALNUT_00011340-RA 387 LHHYSALYDSLEAGFPMHSRTRALVERVFLGPRISVSLARIYRARGDDDsNSGGSSGEWLATSGLRAVPISFANHCQAKLLLGLFN-DGYR 476
                         *******************************************9976651556778899***************************.**** PP

                GRAS 351 veee.sgslvlgWkdrpLvsvSaWr 374
                         vee  ++ + lgWk+r+L+s+S+W+
  WALNUT_00011340-RA 477 VEELaNNKIALGWKSRRLLSASVWT 501
                         **98466777**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.0391481IPR005202Transcription factor GRAS
PfamPF035142.0E-100117501IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSLVSSAIAM AMAMEDTLEL DCSVYSNNTT TTTSPTEHDY GCNRQNWPPI VDWEALAGHD  60
EFKDLIESMM DDGGLNFNLF PSEAVDVVEG GSSNSESADM MAVDDETNND DCKGLRLVHL  120
LIAAAEALTG VNKSRDLARV ILVRLKELVS PTDGTNMERL AAYFTEALQC LLEGTGGVHP  180
KNLIGNGPQR DEQHHQADVL AAFQLLQDMS PYVKFGHFTA NQAILEAVSH DRRVHIVDYD  240
IMEGIQWASL MQALVSRKDG PPAPHLRITA ISRGGSGSGR RSIGTIQETG RRLIAFAASI  300
GQPFSFHQCR LDSDETFRPS ALKLVRGEAL VVNCMLHLPH FNHRSPDSVA SFLSGAKTLT  360
PRIVTMVEEE VGPIGEGGFV GRFLDTLHHY SALYDSLEAG FPMHSRTRAL VERVFLGPRI  420
SVSLARIYRA RGDDDSNSGG SSGEWLATSG LRAVPISFAN HCQAKLLLGL FNDGYRVEEL  480
ANNKIALGWK SRRLLSASVW TPSDSDLYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5510850210380Protein SCARECROW
5b3h_A9e-551085029379Protein SCARECROW
5b3h_D9e-551085029379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817086.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2I4ECG60.0A0A2I4ECG6_JUGRE; nodulation-signaling pathway 2 protein
STRINGEOY162270.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-153GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]