PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011193-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 345aa    MW: 36698.3 Da    PI: 5.2178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011193-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-10194238554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+a      K + a++L + v+Y+k L
  WALNUT_00011193-RA 194 HSIAERLRRERIAERMKALQELVPSA-----NKTDRAAMLDEIVDYVKFL 238
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-10187243No hitNo description
SuperFamilySSF474596.28E-15187248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.158189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-15191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MADNPPEGLG DDFFEQILSA QPTYTSSEAA AAVAAAGYGG GEVGSVPMML QLGSGGGGGG  60
LLRGMGLGMG MAPSLGLNLE QQQHQGFLRY ERFREELVDG NNNLNSNNNN NGSSSSAATS  120
GINERDSVQM SLFPAFGQLQ LHPVRPTAPS PPPGPPQLNQ FHSQQTPGPV GTAAHPPAIR  180
PRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPSAN KTDRAAMLDE IVDYVKFLRL  240
QVKVLSMSRL GGAGAVAQLV ADVPLSSVEG EGIEGATNQQ AWEKWSNDGT EQQVAKLMEE  300
DMGAAMQFLQ SKALCIMPIS LASAIFRTQE TDALTLVKPE SKTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830228.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227682e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4FF030.0A0A2I4FF03_JUGRE; transcription factor UNE12-like
STRINGEMJ066851e-145(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]