PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011068-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 601aa    MW: 68569.4 Da    PI: 5.0568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011068-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052300321122
                         EEETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                         + C  Cgk F++  + k+H ++
  WALNUT_00011068-RA 300 FYCVVCGKKFKSEKQWKNHEQS 321
                         78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.3E-24379IPR001623DnaJ domain
SuperFamilySSF465653.4E-243102IPR001623DnaJ domain
SMARTSM002711.7E-22668IPR001623DnaJ domain
PROSITE profilePS5007619.627776IPR001623DnaJ domain
CDDcd062571.96E-18765IPR001623DnaJ domain
PfamPF002261.9E-21873IPR001623DnaJ domain
PRINTSPR006252.3E-15927IPR001623DnaJ domain
PRINTSPR006252.3E-152742IPR001623DnaJ domain
PRINTSPR006252.3E-154868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.71E-14290340No hitNo description
SMARTSM004511.3E-6297331IPR003604Zinc finger, U1-type
SMARTSM003550.17300324IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162300329IPR007087Zinc finger, C2H2
PfamPF121711.4E-10300325IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280302324IPR007087Zinc finger, C2H2
SMARTSM003558.2571595IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954571600IPR007087Zinc finger, C2H2
PROSITE patternPS000280573595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASEKRCHYE VLGLSRDCTA EEIRSAYKKL ALQRHPDKLV QSGFSQAEAT ARFQELAHAY  60
EVLSDPKERA WYDSHRSQIL FSDPSSTTNS AVPDLFSFFS STAFSGYSNS GRGFYKVYSD  120
LFGKVYANEI DFARKLGLGL DSVREAPVMG NLESPYAQVT AFYNYWLGFS TVMDFCWVDQ  180
YDVMAGPNRK SRRVMEEENN KLRKKARREY NDTVRGLAEF VKKRDKRVID MAMKKNLEMV  240
RKKEEERERK RALERERLEK LRDYVEPEWA RAEEEGNGEE GVEELHEEDE ESKRREGKEF  300
YCVVCGKKFK SEKQWKNHEQ SKKHKEKVAE FRDSLADDEE GLEEDNLEEE LGKVEEERLE  360
AEEDKERVVE EMGERIRDGL EIGTEEENGA ESHEVEEEDE VGAGGFADGD DDEMGVLEAM  420
VAGHKGRKNV SSQQEVKESG SEIQVENDES DGVGFMEYDI RKGTRRNRGG RKDRSKMNGE  480
EAEMDPTRQI SRQKEESNGH DGSNLEESSA HSFAENESNG NREGDDQSAR TKKASSQPVN  540
KKGPGKKDTI AKPKNSSKQK KAKSTSKNSS NVCDTCGEEF GSRNKLHMHL GDTGHASLKH  600
R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824852.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2I4EZM70.0A0A2I4EZM7_JUGRE; DNAJ protein JJJ1 homolog
STRINGXP_008240022.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-155DNAJ heat shock N-terminal domain-containing protein