PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010992-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 43730.8 Da PI: 6.2436 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.8e-51 | 15 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd++ ++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk WALNUT_00010992-RA 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKSEPWDIRG--TTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKV 102 69****************************.9***************83..34679**********************************9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + s +g+ +g++ktLvfy+grap+g k+dW+mheyrl WALNUT_00010992-RA 103 ISS-NGRRIGMRKTLVFYRGRAPHGLKSDWIMHEYRL 138 999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-58 | 9 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 15 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 16 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKSEPWDI 60 RGTTPQNDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KVISSNGRRI GMRKTLVFYR 120 GRAPHGLKSD WIMHEYRLDD NITDTNISNT MGEAIQEEGW VVCRIFRKKS HQKTLDSPII 180 SSIIAETRTQ QVFDSCDEGA LEQILQYTEN SSKELEKDSK SGTIFRPIDN AGMKHCYQYE 240 RFMKLPSLES PNSSCGKKHY QLINSPEMIA ENDQGLVIKQ VSETDPNSDY KMDSAAAITN 300 WAALDRLVAS QLNDQLPEDF KQLVSFDDPN MGYCTQDHHH DDHLEFPTLR SSSSSINRFY 360 HIPRQDYNSE IDLWNFRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 9 | 170 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822780.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-124 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2I4ETR3 | 0.0 | A0A2I4ETR3_JUGRE; NAC domain-containing protein 43-like | ||||
STRING | EOX95598 | 1e-172 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-116 | NAC family protein |