PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010978-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 412aa    MW: 46797 Da    PI: 5.8942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010978-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13222273155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  WALNUT_00010978-RA 222 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIIGGAIDFVKELE 273
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.98E-13220275No hitNo description
SuperFamilySSF474593.53E-16221290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.758221272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-11222273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-14222287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8227278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEIQGESPQL SVPAAGQNCH CQPIMPNWDL YFEEHPNATC VEPEFFTTES LKFDEFEEQQ  60
YFSIPMLEDN MPFLQMLQSV GPPRFLPIKE PSFQTLLRLQ HLKKPWDGYS YIPEMETQIQ  120
SLEFESCITN DIVELHSPVK SETMDLQHSR LEGGSSDCNQ DQPSSTENHC IEGTSASPPP  180
WANPQAWPKQ ITHFPKSLPV TRERRKRKRI RPTKNKEDVE SQRMTHIAVE RNRRRQMNDH  240
LNVLRSLMPT SYIQRGDQAS IIGGAIDFVK ELEQLFHSLE AKKRMRKTQQ GAEAFPPSGL  300
LTSPQSVIGS EEGHCGEGVK AENKSDVAEI KVTVIQTHVN LKIQGQRRPG QLLKTIVALE  360
ELRLTVLHLN ITSSEDSVFY SLNLKIEEEC KLGSANEIAS AVHRILSFID GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208RRKRKR
2222233RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822760.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A2I4ETP60.0A0A2I4ETP6_JUGRE; transcription factor bHLH67-like isoform X1
STRINGEMJ192391e-153(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-81bHLH family protein