PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00010727-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19736.1 Da PI: 6.1072 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.4e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv++++ +G g W+t a+ g++Rt+k+c++rw++yl WALNUT_00010727-RA 16 KGPWTMEEDMILVNYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.741 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.22E-20 | 16 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-11 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-7 | 67 | 92 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MDKKPCNSSQ DAEVRKGPWT MEEDMILVNY IANHGEGVWN TLAKSAGLKR TGKSCRLRWL 60 NYLRPDHLPG RTDNEIKNYW RTRIQKHIKQ AENLYGQSSS SVVMNDQTGS SISQVTAIGR 120 MDVDPLETYS PPSFQTNMDQ PIPAPHLPAP ESINDNYYWS MEDIWSMQLF GGD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822969.1 | 1e-122 | PREDICTED: myb-related protein 305-like isoform X1 | ||||
Refseq | XP_018822970.1 | 1e-122 | PREDICTED: myb-related protein 305-like isoform X2 | ||||
Swissprot | P81391 | 2e-63 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2I4EU82 | 1e-121 | A0A2I4EU82_JUGRE; myb-related protein 305-like isoform X1 | ||||
TrEMBL | A0A2I4EUA1 | 1e-121 | A0A2I4EUA1_JUGRE; myb-related protein 305-like isoform X2 | ||||
STRING | XP_009618404.1 | 6e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 5e-55 | myb domain protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|