PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010079-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 320aa    MW: 37144.9 Da    PI: 8.6512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010079-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.3e-22164264190
                         EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                         f+k+lt+sd  ++  + +pk++a ++           +++k++s++lt++d++ rsW+++++++k+s++++ltkGW +F + n+L+ +D+v
  WALNUT_00010079-RA 164 FQKELTHSDIANKT-FLIPKDYALQYfppltttssdrNEEKRKSIKLTFYDRHCRSWSFQYSHWKSSRSFLLTKGWGRFLRMNNLNHKDIV 253
                         88999888877775.********************9988889************************************************* PP

                         EEEE-SS.SEE CS
                  B3  81 vFkldgr.sef 90 
                          F++ ++ +++
  WALNUT_00010079-RA 254 FFYVRDNgDQG 264
                         ***77664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-1345102IPR016177DNA-binding domain
SMARTSM003804.8E-746107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1146101IPR001471AP2/ERF domain
PROSITE profilePS5103213.72246101IPR001471AP2/ERF domain
CDDcd000187.20E-1447103No hitNo description
Gene3DG3DSA:2.40.330.101.4E-26157277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-22162266IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-19163261No hitNo description
PROSITE profilePS5086310.785163271IPR003340B3 DNA binding domain
SMARTSM010194.3E-10164269IPR003340B3 DNA binding domain
PfamPF023623.8E-19164264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MFMEVGLHSC SNVSPVFECP TFKETIPYHQ HEHLSSNNRR CSSSSRFKGV ILLNSGKWGA  60
RISYRYQPYW LGAHENEQDA AIAYDRAAIK LQRTDVALNF PWTNYSTQES MFQSNHSVKE  120
ILHMIKDQTY ESNFLAFIKA HSSVEPTQVF DLTNEAQISY QLLFQKELTH SDIANKTFLI  180
PKDYALQYFP PLTTTSSDRN EEKRKSIKLT FYDRHCRSWS FQYSHWKSSR SFLLTKGWGR  240
FLRMNNLNHK DIVFFYVRDN GDQGVCYMID AQRKKEENSA IASNMMKDNG LRGNFDNVTE  300
VDGVREATNS VVKLFGVLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1516126811112DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815249.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A2I4E7710.0A0A2I4E771_JUGRE; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGcassava4.1_030966m2e-89(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.16e-47RAV family protein