PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009488-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 337aa MW: 36508.4 Da PI: 7.2093

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009488-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.2	6.3e-70	117	265	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 g++sCqdCGnqakkdC+h+RCRtCCksrg++C thvkstWvpa+krrerqqqla++++++ + + + +++kr+re+ ++s+l++t+l+ WALNUT_00009488-RA 117 GGGISCQDCGNQAKKDCVHMRCRTCCKSRGLECPTHVKSTWVPASKRRERQQQLASMQQQHHELQlRGENPKRQREN--PTTSSLACTRLP 205 5789************************************************99877765544477777777775..788999999999 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + le+ ++P+e++s+ vfrcvrvss+dd+++++aYqtav+igGhvfkGiLydqG+e+ WALNUT_00009488-RA 206 TSA--SGLEVGHFPAELRSATVFRCVRVSSIDDADDQYAYQTAVNIGGHVFKGILYDQGPET 265 876..5689999**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.3E-66	119	264	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.9E-28	215	263	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAGFFPLGGG RSGTPSSQED HRQQSGNNPP TEIPPENLFW YKNEEVAYKQ GFELWQQQEQ 60 VLLQQQEQQQ RHQQQQLQQD LYASAAGLGV GPSRSSINVS DHDSPSRSAF MMMRSAGGGI 120 SCQDCGNQAK KDCVHMRCRT CCKSRGLECP THVKSTWVPA SKRRERQQQL ASMQQQHHEL 180 QLRGENPKRQ RENPTTSSLA CTRLPTSASG LEVGHFPAEL RSATVFRCVR VSSIDDADDQ 240 YAYQTAVNIG GHVFKGILYD QGPETNYSAA GESSSGGGGV QPLNLIASAT TASATTASGG 300 GADVGSSAMT LLDPTSLYPA PLNTFIAGTQ FFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018822058.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	K4B6C9	1e-100	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
Swissprot	Q9XGX0	1e-100	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2I4ERP1	0.0	A0A2I4ERP1_JUGRE; protein SHI RELATED SEQUENCE 1-like isoform X1
STRING	EOX90942	1e-150	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	8e-75	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]