PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009314-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 235aa    MW: 25766.4 Da    PI: 9.0628
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009314-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18182218135
                GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+  nCgt +Tp+WR+gp g+k+LCnaCG++yrk ++
  WALNUT_00009314-RA 182 CTnyNCGTNNTPMWRKGPLGPKSLCNACGIKYRKDEE 218
                         55559*****************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.0E-11178232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-13178220IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.8E-11179217No hitNo description
PfamPF003203.9E-16182218IPR000679Zinc finger, GATA-type
CDDcd002023.04E-11186215No hitNo description
PROSITE profilePS5011412.018186234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASQPFHQAS AGMNSFVPSN PSSGSHGGQV DLTLRLGLPK DSHEKNNLFN LGGQYANPPA  60
PVNPHHAYFS YNHAGPYTPD TYPFGMASHG MGSTNQLGGQ MYADHTNHMK INDPWLANPN  120
YMNSTGVLGH HPYNYYSNIQ PPPAPQMNEY VLLNPSSRTL GNGSSSSRRQ CNTNYNDPNK  180
RCTNYNCGTN NTPMWRKGPL GPKSLCNACG IKYRKDEERK KARDAAESSG TSSRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825247.13e-89PREDICTED: GATA transcription factor 29-like
TrEMBLA0A2I4F0S26e-88A0A2I4F0S2_JUGRE; GATA transcription factor 29-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.18e-21GATA transcription factor 29