PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009281-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22304.2 Da PI: 9.9442 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+++H WALNUT_00009281-RA 38 YTCRFCNRQFRSAQALGGHMNVH 60 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 35 | 65 | No hit | No description |
Pfam | PF13912 | 8.1E-6 | 37 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 37 | 63 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.406 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MERPYSSSGM VKGNSGSNSF QFEEDRSCRT SWLAKQHYTC RFCNRQFRSA QALGGHMNVH 60 RRDRAARLRF LPSSVSESQN PNHVFASSPS SSSAKFLLHT DRCLPSLSLI TSSSPSSASF 120 NEEKKLVISL PRVDPLSPQG KDITNKRRIR SVLGFQGLNV FTQKDEPTVC RKEGIVSLDL 180 EIGLLKDQKE DLDLELRLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018825246.1 | 1e-145 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2I4F0S3 | 1e-144 | A0A2I4F0S3_JUGRE; transcriptional regulator SUPERMAN-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 6e-15 | zinc-finger protein 10 |