PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009129-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 538aa    MW: 61444 Da    PI: 4.9514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009129-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS136.52.9e-421675372374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++++ ela+ +L  + e +sp g++++R+a+y+ + + ++              +++s    ++   a+++f++ +P  +
  WALNUT_00009129-RA 167 HHLLKAYGEALEKDQRELAHVILRCIGEKVSPVGKNLERVAFYLSQEIDNQGDY----------LKQES---YKNFEVAFQAFYQSFPQGR 244
                         68899999***********************************66655554433..........22333...556667899********** PP

                GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfe 177
                         f+h++aN+aIlea+  + e++Hi+Dfd+++G+QWp++++++a +   + +lR+T ++ ++++     s  + eet++rL + A+ lg++++
  WALNUT_00009129-RA 245 FAHFAANSAILEAMPDDtETIHIVDFDMGEGIQWPPMIEEIARQ---QKTLRLTSIKWEDEDcdrvpSPWRFEETKRRLCNQARGLGLKLK 332
                         **************98879***********************86...457*******9998899999999********************* PP

                GRAS 178 fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse............... 251
                          + +  ++l +  +++++  +  +E l+ n+++ l ++ +++      r+ v+++++  +  +v +++  ++ ns+               
  WALNUT_00009129-RA 333 VQEMRIEHLVSE-TKKMKKMSgrREWLVFNCMVGLPHMARSRS-----RRLVMEFLRVAKESIVGLANCSTS-NSGiitfgdgvaceklkh 416
                         **9844444333.33443333579**************83222.....333444444444444444332222.222234444455555555 PP

                GRAS 252 ..sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                           sF   f  +le+y a+++sle++++ +  e+ri +E  ++++ i+++   +  +      + ++ ++  e +G+   +ls+++ +++k 
  WALNUT_00009129-RA 417 csSFGSFFYGCLEHYQAMLESLEVNFSLHLpEARIAMECLFVAPYISSLSWLQMWK------EIREGSHLNEGFGLPGRRLSKEILAEVKE 501
                         669**********************98877899*************9988777776......344456677789***************** PP

                GRAS 340 llrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                         l++   s   +++ +  ++++l Wk+ ++v vS W+
  WALNUT_00009129-RA 502 LVKGEISYRASIQGRvGNEMILEWKGTTMVKVSIWT 537
                         ***998666788855488999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001802840IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5098522.136140516IPR005202Transcription factor GRAS
PfamPF035141.0E-39167537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MMQPDLFQHS WPFYNVMDST FDQGVHHDLS MDGHLDGYEF SSILFTTTED SSEFSSTPFS  60
STLFPSNFVQ YPFCDDSQQV MLAMKDILMV YGDLESILND DAEIECTNGL LGEREGSFSL  120
QQFSPAEDFL CSSPSAKSES SLDVSSIQPL LTFPREDMEV KNLMSLHHLL KAYGEALEKD  180
QRELAHVILR CIGEKVSPVG KNLERVAFYL SQEIDNQGDY LKQESYKNFE VAFQAFYQSF  240
PQGRFAHFAA NSAILEAMPD DTETIHIVDF DMGEGIQWPP MIEEIARQQK TLRLTSIKWE  300
DEDCDRVPSP WRFEETKRRL CNQARGLGLK LKVQEMRIEH LVSETKKMKK MSGRREWLVF  360
NCMVGLPHMA RSRSRRLVME FLRVAKESIV GLANCSTSNS GIITFGDGVA CEKLKHCSSF  420
GSFFYGCLEH YQAMLESLEV NFSLHLPEAR IAMECLFVAP YISSLSWLQM WKEIREGSHL  480
NEGFGLPGRR LSKEILAEVK ELVKGEISYR ASIQGRVGNE MILEWKGTTM VKVSIWTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826197.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4F3G60.0A0A2I4F3G6_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGXP_010093554.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-21GRAS family protein