PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008945-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 39808.1 Da PI: 8.4491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 180 | 227 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00008945-RA 180 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 227 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.75E-10 | 174 | 231 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-17 | 174 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.739 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 176 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 180 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-10 | 182 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MAAFSYQHQP FLLDSIFLPN TPIKMSSLVE EENININYFS QFYPLEPTQE IPVDDISVRE 60 SNCFDHSSKG AFSDNEPSLA KKQSTESSTV VDKLDSGEQV TQKVTPMEKK RKTRNGVSLT 120 TAQSKDPTEG KNKKQKRWNG ALKEEAKKPK AEKKDQKKVS EEPPTGYIHV RARRGQATDS 180 HSLAERVRRE KISERMKILQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV EFLSMKLASV 240 NPMFYDYGMD LDGLIVRPER LTSMQQQITM ASPLPSVTQC SLTQPTGFGQ TPTASAFTTA 300 NNYPITNNSA SLLLQPGQRP NAFPQDIAGI FCEAEDHRQK FLNPSGLSNN LCFLH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018832505.1 | 0.0 | PREDICTED: transcription factor bHLH137-like isoform X1 | ||||
TrEMBL | A0A2I4FLK3 | 0.0 | A0A2I4FLK3_JUGRE; transcription factor bHLH137-like isoform X1 | ||||
STRING | EOY22603 | 1e-156 | (Theobroma cacao) | ||||
STRING | EMJ10483 | 1e-156 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-63 | bHLH family protein |