PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008650-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | AP2 | ||||||||
Protein Properties | Length: 383aa MW: 42303 Da PI: 10.0906 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.2 | 8.1e-08 | 32 | 82 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++++gr++A+++d s++ ++ k + g ++ +e+Aa+a++ a++k++g WALNUT_00008650-RA 32 TRHRWTGRYEAHLWDNSSRRegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 82 589************77744565535555.779999**************98 PP | |||||||
2 | AP2 | 47.8 | 3.5e-15 | 125 | 176 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g WALNUT_00008650-RA 125 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 176 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.671 | 9 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-14 | 32 | 92 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-11 | 32 | 92 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-4 | 32 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-14 | 32 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-10 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-18 | 125 | 186 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-24 | 125 | 186 | No hit | No description |
Pfam | PF00847 | 4.4E-10 | 125 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 126 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 126 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 126 | 190 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MKKLILLIMA RGSLEHKMTK KCPFSFMKKK NTRHRWTGRY EAHLWDNSSR REGQSRKGRQ 60 GGYDKEEKAA RAYDLAALKY WGKTTTTNFP VSNYEKELED MKNMSRQEFV ASLRRKSSGF 120 SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV 180 TNFDMSRYDV KSIANSNLPI GGGKSKTSSE SVSDSKSIDG SRSDDRDLSS ASSVAFASQP 240 STSALSFAIP IKQDPSDYWS LLGYQNSSLN NAKNASVAPH LFQCSVNGSA YHSNTTLPFS 300 MDFSATPSSA NESSSGFFNG GYAQHQNNAT PIQYATPVAI SSNINGYNES SSSYGSSWIG 360 PALHTFQTHA KPTLFQTPIF GIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831020.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-122 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2I4FH75 | 0.0 | A0A2I4FH75_JUGRE; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | POPTR_0006s18330.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-109 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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