PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008539-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 24190.7 Da PI: 8.6523 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 218.8 | 1.7e-67 | 6 | 162 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + ++++ + + ++++ ++++++++ WALNUT_00008539-RA 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--Q-----AQNNNATPDYKIHESGSSSKCNMS 89 5689**********************************************999999995..2.....223333333344444444444444 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +v++ + ++ +++ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl WALNUT_00008539-RA 90 KVAM---RAQVTNAATQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 162 4444...334444445555689****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.4E-72 | 8 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.97E-8 | 105 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.6E-4 | 116 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSTCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAQNNN ATPDYKIHES GSSSKCNMSK VAMRAQVTNA ATQERVVNRP PEKRQRVPSA 120 YNQFIKEEIQ RIKASNPDIS HREAFSTAAK NWAHFPHIHF GLMLETNNQA KALDNVSFVK 180 GKEKQNWVYK LACSTILRFP ENILKSRLVV ELNSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090216 | 2e-65 | BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826716.1 | 1e-130 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q8GW46 | 1e-85 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2I4F4Z3 | 1e-129 | A0A2I4F4Z3_JUGRE; axial regulator YABBY 5-like isoform X1 | ||||
STRING | XP_010105229.1 | 1e-102 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-88 | YABBY family protein |
Publications ? help Back to Top | |||
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