PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008006-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 271aa MW: 31332.7 Da PI: 9.8198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.4 | 1.4e-36 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdk 90 lp G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw Lp + +++ yfF +++++ + ++++ +ra+ sgyWk gk k WALNUT_00008006-RA 14 LPIGYRFRPTDEELVVHYLKRKIFSIPLPA-SVIPEFDVFQTDPWGLPGDL---KEKRYFFGTKKRSGTvHESKCKRAAGSGYWKPIGKYK 100 699***************************.99***************554...34678888887776636889999************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++++ g+++tL+f + +++ g+kt+Wvmhe+rl WALNUT_00008006-RA 101 QILDSkSNQTLGIRRTLIFCERKRSYGTKTRWVMHEFRL 139 ***9856778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-44 | 9 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.253 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-21 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEKPISLING GIRLPIGYRF RPTDEELVVH YLKRKIFSIP LPASVIPEFD VFQTDPWGLP 60 GDLKEKRYFF GTKKRSGTVH ESKCKRAAGS GYWKPIGKYK QILDSKSNQT LGIRRTLIFC 120 ERKRSYGTKT RWVMHEFRLL DSETNLGSTQ VMMSKTEIED WVVYRVFQRK KRPEKQAGII 180 SRSSNNENSE RMEAIMIRPN LMNYCMLELD NSRSDHYLGP PQVPNSSSCS SEITHEVSSN 240 NALDQEETSC SRSRISSFSH IYINVHERAL N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 12 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 12 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 12 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 12 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 12 | 175 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 12 | 175 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 12 | 175 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834095.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2I4FR16 | 0.0 | A0A2I4FR16_JUGRE; NAC domain-containing protein 83-like | ||||
STRING | XP_006468841.1 | 3e-88 | (Citrus sinensis) | ||||
STRING | XP_006447003.1 | 3e-88 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-50 | NAC domain containing protein 83 |