PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007966-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29321.9 Da PI: 5.1823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.6 | 7.1e-25 | 1 | 73 | 1 | 72 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk 72 + pGfrFhPtdeelv +yL +kve+k++++ e ik++diyk++PwdL k ++a++kewyfF+ r +ky+t + WALNUT_00007966-RA 1 MLPGFRFHPTDEELVGFYLLRKVEKKPISI-ELIKQIDIYKYDPWDLAKedITNAGDKEWYFFCIRGRKYRTAS 73 579***************************.89**************84345667999************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.927 | 1 | 175 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.28E-23 | 2 | 74 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 3 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLPGFRFHPT DEELVGFYLL RKVEKKPISI ELIKQIDIYK YDPWDLAKED ITNAGDKEWY 60 FFCIRGRKYR TASDLTESQG LDSGKPQALI SPYIQSTNLV NALASRSPWS TIVEVLVKEV 120 WTLCRIFKRV ASYKKYPTNW KLETSSKQNQ TDSCSKPCSL ESDNDNKELY ISFEDSVLQQ 180 SDERKPLIQQ FDERNHHCFA GQYMNSATTQ FPFPSSYSSF RYPSADDYFF SNGSWDELGP 240 VVQLANDPSQ VYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 3 | 135 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 3 | 135 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 3 | 135 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 3 | 135 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 3 | 135 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 3 | 135 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 3 | 135 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859986.1 | 1e-145 | PREDICTED: LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A2I4HV04 | 1e-144 | A0A2I4HV04_JUGRE; LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_008380332.1 | 5e-68 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-44 | NAC domain containing protein 42 |