PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007682-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 1085aa    MW: 123437 Da    PI: 4.568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007682-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS136.62.6e-421605202365
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++++ elaq +L r+se +sp g++++R+a+++ + + +   +     y  l+ +     +s++  aa+++f++ +P  k
  WALNUT_00007682-RA 160 DHLLKAYGEALEKDERELAQVILRRISEKVSPIGESLERVAFFLSQDIDQNQGD-----Y--LKLE-----SSKNFEAAFQAFYQSFPEGK 238
                         578888999*********************************976666555444.....2..2222.....255677899*********** PP

                GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181
                         f+h +aN+aIlea+  + +++Hi+Df +++G+QWp++++a+a +     +lR+T ++ +e++ s  + eet++rL+k A+ lg++++ + +
  WALNUT_00007682-RA 239 FAHYAANSAILEAMPDDaKTIHIVDFHMGEGVQWPPMMEAIARQ---RKTLRLTSIKWEENVpSPWSFEETKRRLHKHARVLGLNLKVEEM 326
                         **************888799**********************85...457********99999999***********************99 PP

                GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse..........sFlerfl 258
                           ++l + + ++ +++  +E  + n+++ l ++  ++  +     e+L++ k+l +  + +  ++   +  +++           F   f 
  WALNUT_00007682-RA 327 GIEDLVSETRKMQNMDGrREWWVFNCMFLLPHMGISRSRTL--AMEFLNVAKELVSSSINCRTSNrgiITFGDGdpceklkhclGFGSFFE 415
                         6666655555555555579***********99984444443..479999999997766655555522211122245555556678999999 PP

                GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                           +e+y al++sl +++p++  e+ri +E  ++++ i++v   ++       +  e  + + ee G++  +ls+++ ++ak ++++ + s 
  WALNUT_00007682-RA 416 GHVEHYQALLESLRMNFPPHLkEARIAIECLFVAPYISSVSWLQKWV-----KMREGYHLQAEELGLEGRRLSQETLAEAKEMVKEGEgSY 501
                         99***********99999887699999****9999999876666665.....4446688999*************************9999 PP

                GRAS 348 gyrveee.sgslvlgWkdr 365
                         g r+ ee  +++vl Wk+ 
  WALNUT_00007682-RA 502 GVRIVEEtGNEMVLEWKGI 520
                         9998755278999***985 PP
2GRAS1402.4e-4371510823374
                GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91  
                          +lL +  ea+++++ elaq +L+r+se +sp g++++R+a+y+ +  +++              +++s    ++  aa+++f++ +P  
  WALNUT_00007682-RA  715 HLLKAYGEAFEKDERELAQVILKRISEKVSPIGESLERVAFYLSQDVENQGDY----------LKQES---YKNFEAAFQAFYQSFPEG 790 
                          78888999**********************************77766665444..........22333...56777899********** PP

                GRAS   92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfef 178 
                          kf+h +aN+aIl+a+ g  e++Hi+Df +++G+QWp++++a+a +     +lR+T ++ +e   s  + eet++rL++ A+ lg++++ 
  WALNUT_00007682-RA  791 KFAHYAANSAILDAMPGVaETIHIVDFHMGEGVQWPPMMEAIAHQ---HKTLRLTSIKWEEDApSPWSFEETKRRLHNQARVLGLKLKV 876 
                          *****************989***********************96...557********88889999********************** PP

                GRAS  179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...........vvvvveqeadhnse.... 251 
                          + +  ++l + + ++ + ++ +E ++ n++++l ++   ++ ++    e+Lk+ k+l +            ++++ +            
  WALNUT_00007682-RA  877 EEMGIEDLVSETRKMQKRDSrREWMVFNCMFSLPHMG--RGRSRTLVMEFLKVAKELISSstnscgtnnrgIITFGNG------Daydk 957 
                          *98555444444444333336***************9..445555567888888887443111111112224555544......14444 PP

                GRAS  252 .....sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 
                                F   f   +e+y al++sl +++p++  e+ri +E  ++++ i+++    + e      ++++  +  e+ G++  +ls+++ 
  WALNUT_00007682-RA  958 lkhcsGFGSFFDGYVEHYQALLESLRMNFPPHLlEARIAIECLFVAPYISSLSWLHKWE------EMMNGCHPQERLGLEGRKLSQEIL 1040
                          555558888888899**************99999***************9987776666......233333445678************ PP

                GRAS  335 kqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 
                          ++ak ++++ + s g r+  +  +++vl Wk+ ++v vS W+
  WALNUT_00007682-RA 1041 AEAKEMVKEGEsSYGARIVgQIGNEMVLEWKGITMVRVSIWT 1082
                          **********999999998456999****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.85133507IPR005202Transcription factor GRAS
PfamPF035149.2E-40160520IPR005202Transcription factor GRAS
PROSITE profilePS5098523.8496871060IPR005202Transcription factor GRAS
PfamPF035148.3E-417151082IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1085 aa     Download sequence    Send to blast
MMQPELLDQS SWPFYNVIDS TFDELATFDG YGFPSILTTT EDSSGLSSDP FSSTIFQGEF  60
VQYPFCDDSQ QVMLSMRSNL STELGILENI LNDDDIVRMD YITGESEGSF SLEQISTDGE  120
YFLCPSASMI SESSPDISSN QPHVTLPGED MEINNLQSVD HLLKAYGEAL EKDERELAQV  180
ILRRISEKVS PIGESLERVA FFLSQDIDQN QGDYLKLESS KNFEAAFQAF YQSFPEGKFA  240
HYAANSAILE AMPDDAKTIH IVDFHMGEGV QWPPMMEAIA RQRKTLRLTS IKWEENVPSP  300
WSFEETKRRL HKHARVLGLN LKVEEMGIED LVSETRKMQN MDGRREWWVF NCMFLLPHMG  360
ISRSRTLAME FLNVAKELVS SSINCRTSNR GIITFGDGDP CEKLKHCLGF GSFFEGHVEH  420
YQALLESLRM NFPPHLKEAR IAIECLFVAP YISSVSWLQK WVKMREGYHL QAEELGLEGR  480
RLSQETLAEA KEMVKEGEGS YGVRIVEETG NEMVLEWKGI TMARPENWTS KIYQPLLRVT  540
IKKMMQPELL DQLSWPFYDV IDSTFDHEGA HHDQSMELAP LDGYGFPSIL TTTEDSSELS  600
SASFSSTIFP SEFVRYQFYA DSQPVMLAMR SDFSTELGIL ENILNDDEIV GMDYIIEESE  660
GSFSLKQSST AGEDFLCPSP SMKSESSIDV SSNNQPVVTL PGEDMEIDNP LSVYHLLKAY  720
GEAFEKDERE LAQVILKRIS EKVSPIGESL ERVAFYLSQD VENQGDYLKQ ESYKNFEAAF  780
QAFYQSFPEG KFAHYAANSA ILDAMPGVAE TIHIVDFHMG EGVQWPPMME AIAHQHKTLR  840
LTSIKWEEDA PSPWSFEETK RRLHNQARVL GLKLKVEEMG IEDLVSETRK MQKRDSRREW  900
MVFNCMFSLP HMGRGRSRTL VMEFLKVAKE LISSSTNSCG TNNRGIITFG NGDAYDKLKH  960
CSGFGSFFDG YVEHYQALLE SLRMNFPPHL LEARIAIECL FVAPYISSLS WLHKWEEMMN  1020
GCHPQERLGL EGRKLSQEIL AEAKEMVKEG ESSYGARIVG QIGNEMVLEW KGITMVRVSI  1080
WTNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-16731108121374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825795.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4F2C40.0A0A2I4F2C4_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGXP_010093554.11e-179(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.13e-20GRAS family protein