PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007648-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 20486.6 Da PI: 10.2895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.2e-08 | 14 | 66 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 + + +Er+RR +++ ++L +l+P + ps+ +s + L A++YI +L WALNUT_00007648-RA 14 NRKTVERNRRIHMKGLCFKLASLIPDlQNIKPSRNmVSQQDKLDYATRYITQL 66 56789*********************5556666667899999********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.369 | 10 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-10 | 13 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-11 | 13 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-4 | 14 | 71 | No hit | No description |
Pfam | PF00010 | 7.2E-5 | 16 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 16 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MKKTGSNHDA TKPNRKTVER NRRIHMKGLC FKLASLIPDL QNIKPSRNMV SQQDKLDYAT 60 RYITQLRERI EKLKRKKEQV AVSLGTGSCN MIDDTGNGSW LPVVDLRDLG SSIEVILISG 120 LQKNFMHEVT CILQEEGAEV VSGSFSTVGD KIFHTVHAQP KISRIGVETS RVWQRLQELK 180 N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018817318.1 | 1e-133 | PREDICTED: uncharacterized protein LOC108988504 | ||||
TrEMBL | A0A2I4ED43 | 1e-132 | A0A2I4ED43_JUGRE; uncharacterized protein LOC108988504 | ||||
STRING | XP_002511418.1 | 7e-73 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-18 | bHLH family protein |