PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007372-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 623aa    MW: 68309.5 Da    PI: 5.588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007372-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.41.1e-1062536232374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + Ll+cA+  ++++  +a + L  l +l+s++gdp++R+a +f +AL  rl+  ++e +++++ +e   + s++ +  +k +++++P+ k
  WALNUT_00007372-RA 253 LKKLLDCARL-ADSEPGRAVKSLIGLGKLVSERGDPTERVAYHFYQALCGRLSV-QTEKSSTVTEEE---SASEDFTLTYKSLNDACPYSK 338
                         5789*****5.55678888899999****************************9.333333444444...45999999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea++g++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++f f++
  WALNUT_00007372-RA 339 FAHLTANQAILEATDGATKIHIVDFGIVQGVQWAALLQALATRSAGKPtTIRISGIPAPALGksPAASLFATGNRLREFADILKMNFLFEP 429
                         ********************************************776669********9999889999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v + +e+l+ +++rv+p+E+laVn++lql++llde+  + +   + L+l kslsPk+v++ e e+ +n+  F++rf +a ++ysa+f+sl
  WALNUT_00007372-RA 430 -VLTPIEELDESSFRVEPDEVLAVNFMLQLYNLLDETPVSVE---TALRLAKSLSPKIVTLGEYEVRLNGVGFFQRFKNASRFYSAFFESL 516
                         .799******************************99887777...9********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvace..gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                         e +l r+s er  vEr+llgr+i  v+ +e  g+++rer+e +e+Wr  +e++GF+pv+ls++a++qak ll +++ s  y++ e+   ++
  WALNUT_00007372-RA 517 EPNLTRDSPERLQVERQLLGRRIAGVIGAEepGSSKRERMEDKEHWRILMESCGFEPVALSHYAVSQAKILLWNYNySSSYSLIESTPGFF 607
                         ***************************999334569****************************************9999***99999998 PP

                GRAS 360 .lgWkdrpLvsvSaWr 374
                          l W++ pL++vS+Wr
  WALNUT_00007372-RA 608 sLAWNQVPLLTVSSWR 623
                         8**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.704226601IPR005202Transcription factor GRAS
PfamPF035144.0E-104253623IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIN QKQQREEQQH HAHHHRQQQQ LVGVNPLSLN PWTNSTHHTL  60
SGSPSSGFGL TGTGFPDQYH VSGGPDSVEP GFQFPNLEHH STGFRFADFG GGAGGEFDSD  120
EWMDSLMGGG DSTDSSNLPS GYEAWQNNAD YGIYGSDPFA TRPSRLSVAC GPPSDLNRFV  180
FPDTQKSPTP NPSPQPQVPS WTPPPSPPPP SSPPAIIKDA KPPNTSLQIP HRNDVGGVSS  240
SHSPEVESAR PLLKKLLDCA RLADSEPGRA VKSLIGLGKL VSERGDPTER VAYHFYQALC  300
GRLSVQTEKS STVTEEESAS EDFTLTYKSL NDACPYSKFA HLTANQAILE ATDGATKIHI  360
VDFGIVQGVQ WAALLQALAT RSAGKPTTIR ISGIPAPALG KSPAASLFAT GNRLREFADI  420
LKMNFLFEPV LTPIEELDES SFRVEPDEVL AVNFMLQLYN LLDETPVSVE TALRLAKSLS  480
PKIVTLGEYE VRLNGVGFFQ RFKNASRFYS AFFESLEPNL TRDSPERLQV ERQLLGRRIA  540
GVIGAEEPGS SKRERMEDKE HWRILMESCG FEPVALSHYA VSQAKILLWN YNYSSSYSLI  600
ESTPGFFSLA WNQVPLLTVS SWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1482516233375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829455.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2I4FCT30.0A0A2I4FCT3_JUGRE; scarecrow-like protein 4
STRINGEOX911130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein