PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006180-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 288aa    MW: 32125.5 Da    PI: 8.9784
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006180-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.71.4e-3619115197
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++r+kC++ C+lapyfpa+++++f++vhk+FG+snv+k++k+l+ee+r++a++slv+eA +r++dPv G +g ++k+  +l+  k
  WALNUT_00006180-RA  19 ACAACKHQRKKCTEVCILAPYFPADRTREFQAVHKIFGVSNVTKIVKNLKEEDRKTAVDSLVWEASWRQKDPVLGPYGEYRKVYDELKMFK 109
                         7***************************************************************************************999 PP

              DUF260  92 aelall 97 
                         ++ +++
  WALNUT_00006180-RA 110 SQNQEQ 115
                         887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.39618119IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3419113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNMQGNGIVV GTAAGTHPAC AACKHQRKKC TEVCILAPYF PADRTREFQA VHKIFGVSNV  60
TKIVKNLKEE DRKTAVDSLV WEASWRQKDP VLGPYGEYRK VYDELKMFKS QNQEQVMQLT  120
GQWAAVGYKV GPGLIGWNGT NNGMINNKGS LNNIGNTLNC IHDNHGNGIN VDSNPYAYPL  180
NYEDKVVKQE IKHAGSGGVP TLQHNSISGF NQQYFVPDRE IYKKICFSSL GTERVLENVG  240
YVSIICGGRD RSLNVSTYLT YVNLISKIKY QWQEDVCKAA TLMFGSRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-21121264122LOB family transfactor Ramosa2.1
5ly0_B1e-21121264122LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824188.11e-161PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A2I4EXR81e-160A0A2I4EXR8_JUGRE; LOB domain-containing protein 2-like
STRINGEOX941712e-63(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-47LOB domain-containing protein 2