PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005716-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 599aa    MW: 65631.5 Da    PI: 7.8319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005716-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32253309259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  WALNUT_00005716-RA 253 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKKVERSI-DGHITEIVYKGSHNHA 309
                         8****************************************.***************7 PP
2WRKY106.21.7e-33426484159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  WALNUT_00005716-RA 426 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHAGCPVRKHVERASHDLRAVITTYEGKHNHD 484
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27244311IPR003657WRKY domain
PROSITE profilePS5081123.342247311IPR003657WRKY domain
SuperFamilySSF1182904.71E-25250311IPR003657WRKY domain
SMARTSM007744.2E-35252310IPR003657WRKY domain
PfamPF031066.6E-25253308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37411486IPR003657WRKY domain
SuperFamilySSF1182901.7E-29418486IPR003657WRKY domain
PROSITE profilePS5081138.343421486IPR003657WRKY domain
SMARTSM007743.0E-39426485IPR003657WRKY domain
PfamPF031064.8E-26427484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MASSSGSLET SANSHPTSFT FSTTHPFMTT SFSGLLASAY DGEHQNTTTI GIENKHRGLS  60
DRVAQRTGSG VPKFKSIPPP SLPISPPAVS PSSYFAIPDG LSPAELLDSP VLLNTRNILP  120
SPTTGTFPAQ TFAWKSNSGN RQNVKQEDKN YDFSFQTQQR PPLTSSTTNF QSSSATIQTA  180
QQQPWSFHEP TKQDDFSSAK MVKPELSSMQ SYSPEIATIQ TNTQINGNGN GGVQSDGGNY  240
HGQQAQSVSR RSDDGYNWRK YGQKQVKGSE NPRSYYKCTH PNCPTKKKVE RSIDGHITEI  300
VYKGSHNHAK PQSTRRSSSS SSASSYVIQA SNSALTDIPD QSFATHGNGH TDSVATPENS  360
SISMGDEDFD QSSQKSKSGG DEFDEDEPNS KRWKKEGENE GLSAPGSRTV REPRVVVQTT  420
SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHAGCPVR KHVERASHDL RAVITTYEGK  480
HNHDVPAARG SGSHSVSRPL PSNNNSNMAA TTAIRPSAIT NHHTNNNYVN NHLHNLRLPT  540
SEGQSPFTLE MFQSPGSFGF SGFENSIGSY MNQPQDTDNV YSRAKEEPRD DMFLESLLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36242487778Probable WRKY transcription factor 4
2lex_A5e-36242487778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828546.10.0PREDICTED: WRKY transcription factor WRKY24-like isoform X2
SwissprotQ6B6R41e-143WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2I4FA730.0A0A2I4FA73_JUGRE; WRKY transcription factor WRKY24-like isoform X2
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]