PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005519-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 293aa    MW: 31283.4 Da    PI: 6.256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005519-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10142186554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  WALNUT_00005519-RA 142 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 186
                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15139196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7142186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNHPSAEA TTNDDFLDQI LGIPTFGSAD PGGLPVPDAG LSSGGHPPMM LQLSSGDGSG  60
GFHGQVFPLG LSLEQGKGGF LKPEDASGSS KRFRDDLVDG RASSMKNVFH GQPMPTTLAA  120
APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIV  180
DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEEEG SDGGRNQPAW DKWSNDGTER  240
QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYQTQPSD TSSIVKPESN LPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827307.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-130UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4F6N20.0A0A2I4F6N2_JUGRE; transcription factor UNE12-like
STRINGevm.model.supercontig_52.971e-162(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]