PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005088-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 615aa    MW: 67752.2 Da    PI: 5.1826
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005088-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.85.5e-1082466152374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + Ll+cA+  + ++  +a + L  l + +s++gdp++R+a +f +AL +rl+    +  k+l +se+  + s++ +  +k++++++P+ k
  WALNUT_00005088-RA 246 LRKLLDCARLTE-SEPDRAVKSLIALGKFVSERGDPTERVAYHFSQALYSRLSV---QAEKSLIVSEEG-SASEDFTLTYKALNDACPYSK 331
                         5789*****655.578888889999****************************9...556666555554.568999999************ PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++f f++
  WALNUT_00005088-RA 332 FAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPtMIRISGIPAPALGnsPAASLLATGNRLREFADILDMNFVFEP 422
                         ********************************************766659********9999889999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + + +e+l+ +++r++p+E+laVn++lql++llde     +   + L+l ksl+Pk++++ e e+++n+  Fl+rf +al+yysa+f+sl
  WALNUT_00005088-RA 423 -ILTPIEELNESSFRFEPDEVLAVNFMLQLYNLLDEIPVAVE---AALRLAKSLNPKILTLGEYEVSLNRVGFLQRFKNALRYYSAVFESL 509
                         .799******************************76555555...8********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359
                         e +l+r+s er kvEr llgr+i  v+  e++  +rer+e +e+Wr  +e+aGF++v+ls++a++qak ll +++ s  y++ e+s  ++ 
  WALNUT_00005088-RA 510 EPNLSRDSAERFKVERLLLGRRIAGVIGPEESGtKRERMEDKEHWRVLIESAGFETVALSHYAVSQAKILLWNYNySSKYSLVESSPGFFt 600
                         ****************************9988769****************************************9999***999988888 PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l W++ pL++vS+Wr
  WALNUT_00005088-RA 601 LAWNEVPLLTVSSWR 615
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.016219593IPR005202Transcription factor GRAS
PfamPF035141.9E-105246615IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQREEQQQ QHHHQQQHLV GINPLSLNPW NNTHHTLSGS  60
PNSGFGLTGT GFSDPFQVGG GADAGEPGFQ FPNLEHHSTG FRFTEFGGGP CGEFDSDEWM  120
DSLMGGGDST DSSNLPTGYD AWPNNADFGL YGTDPFTACP NRLSVPCSDL NRVIFSDTQK  180
SPTPSPSIQP QVPSWTPPQP QPQPSPAVIK DAKPTNTSLP SPHKNDVVRV SVSSCSLEVE  240
SAPPLLRKLL DCARLTESEP DRAVKSLIAL GKFVSERGDP TERVAYHFSQ ALYSRLSVQA  300
EKSLIVSEEG SASEDFTLTY KALNDACPYS KFAHLTANQA ILEATERATK IHIVDFGIVQ  360
GVQWAALLQA LATRSTGKPT MIRISGIPAP ALGNSPAASL LATGNRLREF ADILDMNFVF  420
EPILTPIEEL NESSFRFEPD EVLAVNFMLQ LYNLLDEIPV AVEAALRLAK SLNPKILTLG  480
EYEVSLNRVG FLQRFKNALR YYSAVFESLE PNLSRDSAER FKVERLLLGR RIAGVIGPEE  540
SGTKRERMED KEHWRVLIES AGFETVALSH YAVSQAKILL WNYNYSSKYS LVESSPGFFT  600
LAWNEVPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1452446153375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826448.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2I4F4710.0A0A2I4F471_JUGRE; scarecrow-like protein 4
STRINGEOX911130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein