PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004884-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 321aa    MW: 35161.8 Da    PI: 8.2096
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004884-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.3e-19235268134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  WALNUT_00004884-RA 235 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 268
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15228291No hitNo description
SMARTSM004017.5E-16229279IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.609229265IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14233266IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.19E-13234281No hitNo description
PfamPF003201.4E-16235268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440235260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKMNGSSLLN ENFNGVSDEC LDDIIKFFDF PLEDVEGNMG EDWSAKLEWL DPPSMDVLAG  60
LAPGFSSKNC VDASKCPESL SAPHDETSPV KELPVTAEVT SSGSDLHKSS SKGKGLRVFQ  120
TSSPISVLES SSSCSVENPT TIDLKIIIPV KRARSKRTCR PNFNLGFMIP RVSSAPKISN  180
PPADFESASE TNFTEAVSNH WKRKMRKEKN LAVLSGATET RSYSSQGPGS TTRKCMHCEV  240
TKTPQWREGP MGPKTLCNAC GVRYRSGRLF PEYRPMASPT FVESLHSNSH KKVVEMRSKA  300
STGARMAEME TWSSSCGKLC N
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819546.10.0PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_018819547.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A2I4EJH00.0A0A2I4EJH0_JUGRE; GATA transcription factor 11-like isoform X1
STRINGevm.model.supercontig_65.55e-83(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-47GATA transcription factor 11