PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004727-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 410aa    MW: 45773.4 Da    PI: 9.482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004727-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-54782051128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhP+deel+++yL +k+++ +++  ++i +vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke
  WALNUT_00004727-RA  78 LPPGFRFHPSDEELITYYLINKISDANFTG-RAIGDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 167
                         79*************************999.89***************99999************************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++  ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  WALNUT_00004727-RA 168 IFNGeTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 205
                         **9767788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6470226IPR003441NAC domain
PROSITE profilePS5100560.55778226IPR003441NAC domain
PfamPF023654.3E-2879205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MQGIKKSRRE PSNSPSYGSL SWLHALETHN SSTYFHVTLS LLQKQSSNQN GKEQGKKEII  60
KDNMAGSDHH HAKDHEKLPP GFRFHPSDEE LITYYLINKI SDANFTGRAI GDVDLNKCEP  120
WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN GETSELVGMK  180
KTLVFYRGRA PRGEKTNWVM HEYRIHSKSA FRNTKDEWVV CRVFQKSAGT KKFPSNQSRA  240
GLNPYNLEIG HPSALPVPQM MQLGDPAGQF HYGRNYVSSA ELAELTRVFR GGGSTSHVNG  300
QLQMQPQLNY PPLGAGGCFT ISGLNLNLGG GAGTSQPVFR SMPPAPAPAP PSLAMNHHHQ  360
HDVSSSMMTG NPLAAETSGY GTEMNHGNPP SNRYMGMDHC LDLDNYWPPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-537823217171NO APICAL MERISTEM PROTEIN
1ut4_B3e-537823217171NO APICAL MERISTEM PROTEIN
1ut7_A3e-537823217171NO APICAL MERISTEM PROTEIN
1ut7_B3e-537823217171NO APICAL MERISTEM PROTEIN
3swm_A3e-537823220174NAC domain-containing protein 19
3swm_B3e-537823220174NAC domain-containing protein 19
3swm_C3e-537823220174NAC domain-containing protein 19
3swm_D3e-537823220174NAC domain-containing protein 19
3swp_A3e-537823220174NAC domain-containing protein 19
3swp_B3e-537823220174NAC domain-containing protein 19
3swp_C3e-537823220174NAC domain-containing protein 19
3swp_D3e-537823220174NAC domain-containing protein 19
4dul_A3e-537823217171NAC domain-containing protein 19
4dul_B3e-537823217171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845594.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X2
TrEMBLA0A2I4GNX60.0A0A2I4GNX6_JUGRE; protein CUP-SHAPED COTYLEDON 1-like isoform X2
STRINGXP_002527980.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-106NAC domain containing protein 38