PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004676-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 351aa    MW: 39063.4 Da    PI: 5.0533
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004676-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.9e-18239273135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  WALNUT_00004676-RA 239 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 273
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-8118329IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.36233269IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-16233283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14235270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.42E-15236297No hitNo description
CDDcd002021.06E-14238285No hitNo description
PfamPF003201.3E-15239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAPEFFQSA GFCPQYVPEK RHSTDNKTVG AGGDHFIVED LLDFSNEDAV ITDGTLDKAA  60
GNSIESSTVT VVDSCNSSSF SGGEPNFVGD IGCRNYSDEY FSSDLCEPYD DLAELEWLSN  120
FVEESFSSED LQKLQLISGM KARTDEASET SREFQPEPSW NSPIFNPDMS VPAKARSKRS  180
RAAPCNWTSR LLVLSQATAS PEPDVVYQAP VSSGKKTAKA TPKKKDGPEG AVLSDGRKCL  240
HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFMLTKH SNSHRKVLEL  300
RRQKELLRAQ QQEEEQQQQQ FLHHPNMVFE VSNGDDYLIH QHVDPDFRQL I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845502.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697813e-95GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2I4GNM30.0A0A2I4GNM3_JUGRE; GATA transcription factor
STRINGcassava4.1_010069m1e-175(Manihot esculenta)
STRINGXP_010267189.11e-175(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-75GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]