PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003992-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 312aa MW: 35963.1 Da PI: 6.3231

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003992-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.3	2.3e-47	16	142	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+ +yLk+ v gk+ ++ ++i ++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++l WALNUT_00003992-RA 16 PGFRFHPTEEELLEFYLKNTVFGKRPRF-DIIGFLNIYHHDPWDLPGMAKIGEREWYFFVPRDRKHGSGGRPNRTTENGFWKATGSDRRIL 105 9**********************888.99***********888999**********************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl WALNUT_00003992-RA 106 SLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 142 97666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.651	14	160	IPR003441	NAC domain
SuperFamily	SSF101941	1.28E-56	14	160	IPR003441	NAC domain
Pfam	PF02365	3.5E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MTATAMNEMT PELELPGFRF HPTEEELLEF YLKNTVFGKR PRFDIIGFLN IYHHDPWDLP 60 GMAKIGEREW YFFVPRDRKH GSGGRPNRTT ENGFWKATGS DRRILSLSDP KRIIGLRKTL 120 VFYKGRAPRG TKTDWVMNEY RLPDSSPLPK EIVLCKIYRK ATSLKALEQR AVMEEQIIMK 180 NFHSSPAYSS PPQSTSVPQL ETVSFLAQHE EDQFLAPIPH AVHNNIVFKK EAEEEVQAVA 240 AIEDQAEEMA GERSQMESGV FCTPLQFPLG KDNLPELQVP KLMMDWTQDT FWTQLNSPWL 300 QSLTPYANIL NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-46	12	160	12	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841539.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	1e-99	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2I4GCA4	0.0	A0A2I4GCA4_JUGRE; NAC transcription factor 29-like
STRING	XP_008236110.1	1e-146	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-109	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]