PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003483-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | SBP | ||||||||
Protein Properties | Length: 435aa MW: 49216.1 Da PI: 6.5601 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.3 | 1.6e-36 | 124 | 200 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k WALNUT_00003483-RA 124 RCQVPGCETDISELKGYHRRHRVCLRCAHATTVVLDGVAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNVRRRRKP 200 6**********************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-28 | 120 | 186 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.752 | 122 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.28E-34 | 123 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.8E-28 | 125 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MESPSRPQQS PNPRVSEEME DPSSDLWDFS ELLDFTVDEH FSVSLDPDDI HPHPIPQEDP 60 AAPTSNRRKR DPRLICSNFL AGRIPCACPE LDEKMEMEME VDVHGKKRAR SVRTSTRRPR 120 AAARCQVPGC ETDISELKGY HRRHRVCLRC AHATTVVLDG VAKRYCQQCG KFHILSDFDE 180 GKRSCRRKLE RHNVRRRRKP SDSRVAAYSE PKGAMQTENV PCDGEAEKDG LCSSSPMAEM 240 EAVLESEDVR VTTLCSDLNS QNMYCDTVAS FVASGETQMH GENDNTKCSL SPLYCDNKTD 300 YSSVIFQWLS SMPVELEGYI RPGCTILTVF IAMPMFMWTK LSEDPLSYLH DFVISPGRML 360 SGRGTILVFI NDMIFRVMKG GTSVMKVKVE VRAPRLHYVH PICFEAGKPL EFVACGSNLL 420 QSKLRYAIDN IELYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 7e-41 | 121 | 203 | 2 | 84 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 197 | RRKLERHNVRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840576.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q8S9G8 | 1e-139 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2I4G9L0 | 0.0 | A0A2I4G9L0_JUGRE; squamosa promoter-binding-like protein 7 | ||||
STRING | VIT_05s0020g02160.t01 | 1e-179 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 1e-135 | squamosa promoter binding protein-like 7 |