PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003171-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 614aa    MW: 67252.3 Da    PI: 5.0316
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003171-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.52.6e-1382466051374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l p+++ +++ s+ l +   f+e +P+l
  WALNUT_00003171-RA 246 LVHALVACAEAVQQNNLKLAEALIKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPQNALDHSLSDILLM--HFYESCPYL 326
                         689****************************************************........44555554455665554..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +v
  WALNUT_00003171-RA 327 KFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPVFRLTGIGPPSPDNSDHLQEVGWKLAQLAETIDVEFEYRGFV 417
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         a++l+dl+ ++L+++p   E++aVn+v+ lh+ll++++++e+    vL++vk+++P++++vve ea+hn++ F++rf+e+l+yys++fdsl
  WALNUT_00003171-RA 418 ANSLADLDASMLDLRPseVESVAVNSVFDLHKLLARPGAIEK----VLSVVKKMKPEIMTVVELEANHNGPVFMDRFTESLHYYSTMFDSL 504
                         ****************88899*********************....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e ++   s++++ +++++lg++i nvvacegaer erhet ++Wr rl +aGF pv l+++a kqa++ll  ++  +gyrvee+sg+l+lg
  WALNUT_00003171-RA 505 EGSV---SNQDKAMSEVYLGKQILNVVACEGAERLERHETSAQWRTRLCSAGFAPVYLGSNAFKQASMLLDLFAgREGYRVEENSGCLMLG 592
                         ***7...999999*************************************************************9**************** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  WALNUT_00003171-RA 593 WHTRPLIATSAWK 605
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.7E-2941115No hitNo description
PfamPF120412.4E-3241108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.869220584IPR005202Transcription factor GRAS
PfamPF035149.1E-136246605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MKRELDPNLQ SLTPPDSNSM TATAKAKMCW EDEVQPDCGM DELLAVLGYQ VRSSDMAEVA  60
QKLELLDDLM AGNAHGDGLS QLASETVHYN PSDLSTWLQS MLSEFNPLAV NGFDPMVPHA  120
TGAVAPSAPL DDSLLAPAES STITSIDFDQ QNGINHTRVF EDSSSSDYDL KAIPGKAMYS  180
QPQSRTAQIE SPSLRDAKRL KPSSASRSNQ DVLFPSPSSM GGGFTVPSES TRSVVLGDNQ  240
ENGIRLVHAL VACAEAVQQN NLKLAEALIK QIGFLAVSQA GAMRKVATYF AEALARRIYR  300
LYPQNALDHS LSDILLMHFY ESCPYLKFAH FTANQAILEA FEGKKRVHVI DFSMNQGMQW  360
PALMQALALR PGGPPVFRLT GIGPPSPDNS DHLQEVGWKL AQLAETIDVE FEYRGFVANS  420
LADLDASMLD LRPSEVESVA VNSVFDLHKL LARPGAIEKV LSVVKKMKPE IMTVVELEAN  480
HNGPVFMDRF TESLHYYSTM FDSLEGSVSN QDKAMSEVYL GKQILNVVAC EGAERLERHE  540
TSAQWRTRLC SAGFAPVYLG SNAFKQASML LDLFAGREGY RVEENSGCLM LGWHTRPLIA  600
TSAWKLAGKA TVAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6324160414378Protein SCARECROW
5b3h_A3e-6324160413377Protein SCARECROW
5b3h_D3e-6324160413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842887.10.0PREDICTED: DELLA protein GAIP-B-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2I4GG630.0A0A2I4GG63_JUGRE; DELLA protein GAIP-B-like
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein