PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003165-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WOX | ||||||||
Protein Properties | Length: 360aa MW: 41092.1 Da PI: 9.7976 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 88 | 147 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Le+l+++ +r+p+ae++ ++A+ l +++ ++V++WFqN++a+e++ WALNUT_00003165-RA 88 TRWNPTSEQLLALEDLYRRgTRTPTAEQIHQIAAYLrrfgKIEGKNVFYWFQNHKARERQ 147 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 108.8 | 3.1e-35 | 87 | 149 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+Pt+eQ+ Le+ly++G+rtP++e+i++i+a L+++Gkie+kNVfyWFQN+kaRerqk+ WALNUT_00003165-RA 87 TTRWNPTSEQLLALEDLYRRGTRTPTAEQIHQIAAYLRRFGKIEGKNVFYWFQNHKARERQKR 149 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-13 | 84 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-4 | 85 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.6E-18 | 88 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.40E-5 | 88 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 88 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.127 | 93 | 148 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MWTMGSHGDG REITNLSDPV SGFKLRPLIP KPTSVIPRNS IISPILAPPY RDCSTHFTTS 60 LYSLNHQPGR YVTEQFRTNF NPQPLVTTRW NPTSEQLLAL EDLYRRGTRT PTAEQIHQIA 120 AYLRRFGKIE GKNVFYWFQN HKARERQKRR REMASHLPEQ QRGSSSPAEK ESAVTRRTVY 180 KVRQEKKWAP LLNCSELKEE SATSMNKAAI AAERFTHGWC VQFGERESQQ QRRSTGDRRG 240 GTWQSTETPC SPPIKTLPRT ATLSDTTNLL DSHYFMSMTP DKEDVPHLGD QIRSCESKTL 300 NLFPLPGNDN SDGNDHVSRT NTKVPITSRP DDSFASNQFF EFLPLKIRGK QPADPSCDQN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842699.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A2I4GFL9 | 0.0 | A0A2I4GFL9_JUGRE; WUSCHEL-related homeobox 1-like | ||||
STRING | VIT_01s0011g05020.t01 | 7e-79 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 8e-39 | WUSCHEL related homeobox 1 |