PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003143-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Nin-like | ||||||||
Protein Properties | Length: 248aa MW: 29052.3 Da PI: 6.5229 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.7 | 3e-25 | 140 | 188 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l++++k+F+ pi++AAk+++v+lTvLK++CR+++IkRWPhRk+ksl WALNUT_00003143-RA 140 VLELDEIQKHFDIPITKAAKKMNVGLTVLKKRCRELNIKRWPHRKLKSL 188 5899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.075 | 121 | 210 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.2E-22 | 141 | 188 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MMPVLENIPK MEINPHEFNW YYPEECSDRI LELPPLDCYF ELDPLPFPHG NKQLYITEFK 60 NFEALNPDFF SAEPDFPLFY EDVAVDQSPL NSVTDSIGQF ENLATYLSEY STIIHQGEYQ 120 SSNNTEEEKR TISGRKKMAV LELDEIQKHF DIPITKAAKK MNVGLTVLKK RCRELNIKRW 180 PHRKLKSLTS LINNVKELGL TKEIETLEEH KKILEKLPDA ELTERTRKLR QACFKANYKK 240 RRSLAIQA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842674.1 | 1e-157 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A2I4GFJ4 | 1e-156 | A0A2I4GFJ4_JUGRE; protein RKD4 | ||||
STRING | EOY23580 | 7e-78 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-46 | RWP-RK domain-containing protein |