PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003086-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 500aa MW: 55429.1 Da PI: 4.3121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.7 | 8.5e-48 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrF+Pt++el+++yL k++gk++e +i+ev+ +k+ePwdLp + + ++++ew+fFs+ ++k++tg+r+nr+t++gyWk+tgkd WALNUT_00003086-RA 8 LPRGFRFSPTEQELIDYYLSSKINGKNHEDIYFIREVQFCKWEPWDLPdMsGIVSKDREWFFFSPPEQKHRTGNRSNRSTETGYWKSTGKD 98 799************************998778**************95246667999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s +++l+g+kktLvfy gr+p+g +t Wvmhey+ WALNUT_00003086-RA 99 RRIMS-GSTLIGMKKTLVFYLGRSPTGIRTPWVMHEYQT 136 *****.99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-54 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.311 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MDALSLKLPR GFRFSPTEQE LIDYYLSSKI NGKNHEDIYF IREVQFCKWE PWDLPDMSGI 60 VSKDREWFFF SPPEQKHRTG NRSNRSTETG YWKSTGKDRR IMSGSTLIGM KKTLVFYLGR 120 SPTGIRTPWV MHEYQTTQKE LNGTNPGQNP FVLCRLFDKQ KKSSKGPNFN DARPASGLKE 180 GESDLAVASA SEVQAEDNRT INECSNYENS HGTISDTTAL VESDDNNYSA CFAEVILTKD 240 DLQLEEEIRR VLNPLDCEPL SSLISSSNNP AVSSPATAKS SLKEAESEPA EADNYLKLCY 300 PEDNYDGIIS NALAYAECNL ISDNVYAAKN QMAGATASEG GLQSEDGLAM SDISQGTIDW 360 NLPFQFFPSS PSDMHKESDP FCISDAVTND LNNSHGGVCL QYDLNGYPYI PNMSGSQKNL 420 TFGCETGKST VSSRDDGSCS GSDMEIEDLL LEPTYEDSED VNKRKSSLGF LNPEPISSME 480 GSGPSNQIIG SDLTPMNYWY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-36 | 6 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-36 | 6 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-36 | 6 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-36 | 6 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-36 | 6 | 165 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-36 | 6 | 165 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-36 | 6 | 165 | 15 | 171 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842748.1 | 0.0 | PREDICTED: NAC domain-containing protein 91-like | ||||
TrEMBL | A0A2I4GFS2 | 0.0 | A0A2I4GFS2_JUGRE; NAC domain-containing protein 91-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 5e-66 | TCV-interacting protein |